Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1223 ATGTCCGGCAGTCGAGCAAGAAATTTCCGCCGCCGTGCCGACGACAATGACGACGACGACGAACCCAATGGCTCCGCCGCCCCTTCAATCTCATCGAAACCCTCCTCCACCGTCGCCAATAAGCCCAAGAAGGCAACCCCTCAGGTTCCCAAGCTTCTCAGCTTCGCCAGTGACGAAGAGAACGATGCCCCACTTCGCCCTTCCTCTTCCAAACCTTCCAATTCCAAGAAGTCCTCTTCTTCTGCTCGACTTGCCAAGCCATCCTCCGCCCACAAGATCACTGCCATGAAGGACCGCATCGCTCACTCTTCTTCAATTTCCGCTTCCTCTGTTCCCTCCAATGTGCAGCCTCAAGCTGGAACTTATACCAAGGAGGCCCTCCGCGAGTTGCAGAAGAATACTCGCACGCTTGCGAGCTCAAGACCCTCTTCCGAATCGAAGCCTTCCTCCGAACCTGTTATTGTTCTAAAGGGTCTTCTCAAGCCCGTCGAACAAATTCCGGACAATGCTAGAGAAGCTAAAGAGTCGAGCTCCGAGGATGAAGAAGGGGGTATTAATGAGAAGAGTGCCGGTTCGCTTCGGAGGAGTAAGGAAGATACCTTAGCTCGAATGGCTTCAATGGGGATTGGCAGAGGAAAGGATTCACCTGGATCGTCATTTCCTGATCAAGCGACCATTAATGCAATTCGCGCAAAAAGGGAACGTATGCGACAGGCTGGGGTTGCAGCGCCGGATTATATATCTTTAGATGCAGGAAGCAACCGCACTGCGCCGGGGGAGTTGAGCGATGAAGAGGCAGAATTTCCGGCGAGAATCGCTATGATTGGAGGGAAAATAGAGAGTTCGAAGAAGGGCGTGTTTGAGGAAGTAGATGAACAAGCAATCGATGGGGTAAGAACGAATATTATTGAGCACAGCGACGAGGACGAGGAGGAGAAAATTTGGGAGGAGGAGCAGTTTAGGAAGGGTCTGGGAAAGAGAATGGATGATGGTTCTACTAGGGTGGAGAACACTAGTGTCCCTGTTGTTCAGAGTGTTCAGCAACAAAACTTAATTTACCCCACTACAGCTGGTTATAATTCGGCGCCTAGCATGTCTACAGCTACAAGTATAGGAGGTTCTGTTGGTGTTTCACAGGGTTTGGATGGGCTATCAATATCTCAGCAAGCTGAGATTGCTAAAAGAGCAATGCAAGATAATATGGGGAGGCTTAAGGAATCTTATCGAAGAACTGCATCATCGGTGTTGAAGACCGACGAAAATTTGTCTGCATCTCTTATGAATATCGCAGCTCTTGAAAAGTCTCTTTCTGCTGCTGGTGAGAAGTTTATATTTATGCAAAAGCTTCGTGACTTTGTTTCTGTCATCTGTGACTTTTTGCAGCATAAAGCTCCATTCATAGAGGAACTTGAGGAGCAGATGCAAAAACTTCACGAAGAACGTGCTTCCACTGTCGTAGAAAGAAGAGTAGCTGATAATGACGATGAAATGGTGGAGATAGAAACAGCTGTAAAAGCAGCAACGTCAATTTTGAATAAGAAAGGGAACAGCACTGAAATGATTGCTGCGGCCACAAGTGCAGCCCAGGCAGCAATTGCCTCTGCAAGGGAACATGCAAATCTACCAACGAAGTTAGATGAATTTGGTAGGGATTCAAATTTGCAGAAACGTATGGATTTGAAACGGAGAGCTGAGGCACGAAAGCGCCGGAGAGCTCAATACGATTCCAAGAGACTAGCATACACAGAGGTGGATGGCCATCAAAAAGTAGAAGGAGAGTCTAGCACTGATGAGAGTGATAGTGAGAGTGCAGCGTACCAGTCGAACCGTGATTTATTGCTTCAGACTGCTGATCAGATTTTTAGTGATGCAGCTGAGGAGTTTTCTCAACTTTCTGTGGTGAAACAGAGGTTTGAAGAATGGAAGAGAGATTATTCAGCAATGTACCGCGATGCATATATGTCATTAAGCACTCCTGCTATCTTCTCTCCTTATGTGAGATTGGAACTCTTGAAGTGGGACCCCCTACATGAAAATGCAGATTTTTTTGATATGAACTGGCATTCTTTGCTGTTCAATTATGGTATGCCGGAGGATGGAAGTGATTTTGCTCCAAATGATGCCGATGCTAACCTTGTCCCAGAACTAGTCGAGAAGGTTGCACTTCCAATATTGCACCATGAAATTTCTCATTGTTGGGACATGCTCAGCACACATGAAACCAGAAATGCAGCTTTTGCTACAAGCTTGATTACTAACTATGTTCCAACATCAAGTGAAGCTCTTACAGAATTATTGGTTGTTATTCGCACCCGTTTGTCCAGTGCTGTTGAAGATCTTACGGTTCCTACTTGGAATGGACTTGTGATGAAAGCTGTTCCAAATGCTGCTCGAATTGCAGCATATCGGTTTGGCATGTCCGTTCGATTGATGAGAAACATATGTTTGTGGAAAGATATTATTGCAGTGCCCATTTTAGAAAAGCTTGCCCTTGAAGAGCTTCTGTATGGAAAAGTTCTACCTCATGTTAGAAGTATCACAGCGAACATCCATGATGCAGTCACAAGAACAGAGAGAATCATTGCTTCTCTTTCAGGAGTGTGGACAGGCCCCAACATCACTGGGGATCGCAGTTACAAGATGCAACCATTGGTAGACTATGTTCTGCTGCTGGGAAGAACATTGGAGAAAAAACACATTTCAGGCATAGCTGAGAGTGAGACAAGCGGACTAGCTCGGCGATTAAAGAAGATGCTAGTTGATCTGAATGAATATGACAACGCAAGGGACATTGTTAAGACCTTCCATCTCAAGGAGGCATTATGA 2826 46.07 MSGSRARNFRRRADDNDDDDEPNGSAAPSISSKPSSTVANKPKKATPQVPKLLSFASDEENDAPLRPSSSKPSNSKKSSSSARLAKPSSAHKITAMKDRIAHSSSISASSVPSNVQPQAGTYTKEALRELQKNTRTLASSRPSSESKPSSEPVIVLKGLLKPVEQIPDNAREAKESSSEDEEGGINEKSAGSLRRSKEDTLARMASMGIGRGKDSPGSSFPDQATINAIRAKRERMRQAGVAAPDYISLDAGSNRTAPGELSDEEAEFPARIAMIGGKIESSKKGVFEEVDEQAIDGVRTNIIEHSDEDEEEKIWEEEQFRKGLGKRMDDGSTRVENTSVPVVQSVQQQNLIYPTTAGYNSAPSMSTATSIGGSVGVSQGLDGLSISQQAEIAKRAMQDNMGRLKESYRRTASSVLKTDENLSASLMNIAALEKSLSAAGEKFIFMQKLRDFVSVICDFLQHKAPFIEELEEQMQKLHEERASTVVERRVADNDDEMVEIETAVKAATSILNKKGNSTEMIAAATSAAQAAIASAREHANLPTKLDEFGRDSNLQKRMDLKRRAEARKRRRAQYDSKRLAYTEVDGHQKVEGESSTDESDSESAAYQSNRDLLLQTADQIFSDAAEEFSQLSVVKQRFEEWKRDYSAMYRDAYMSLSTPAIFSPYVRLELLKWDPLHENADFFDMNWHSLLFNYGMPEDGSDFAPNDADANLVPELVEKVALPILHHEISHCWDMLSTHETRNAAFATSLITNYVPTSSEALTELLVVIRTRLSSAVEDLTVPTWNGLVMKAVPNAARIAAYRFGMSVRLMRNICLWKDIIAVPILEKLALEELLYGKVLPHVRSITANIHDAVTRTERIIASLSGVWTGPNITGDRSYKMQPLVDYVLLLGRTLEKKHISGIAESETSGLARRLKKMLVDLNEYDNARDIVKTFHLKEAL 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77453107 77460470 + Hsped.01g12230.1 Hepe01g1223 560333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1223 941 PANTHER GC-RICH SEQUENCE DNA-BINDING FACTOR 1 941 IPR012890 GO:0000398(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0005634(PANTHER)
Hepe01g1223 941 MobiDBLite consensus disorder prediction 1 225 - -
Hepe01g1223 941 MobiDBLite consensus disorder prediction 582 596 - -
Hepe01g1223 941 MobiDBLite consensus disorder prediction 582 607 - -
Hepe01g1223 941 MobiDBLite consensus disorder prediction 167 201 - -
Hepe01g1223 941 MobiDBLite consensus disorder prediction 66 87 - -
Hepe01g1223 941 Pfam GC-rich sequence DNA-binding factor-like protein 632 835 IPR022783 -
Hepe01g1223 941 Coils Coil 467 487 - -
Hepe01g1223 941 MobiDBLite consensus disorder prediction 25 43 - -
Hepe01g1223 941 MobiDBLite consensus disorder prediction 100 121 - -
Hepe01g1223 941 MobiDBLite consensus disorder prediction 132 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1223 K13211 - - csv:101204517 1541.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g258 . . . . . . . . . Cmo18g01064 . Cma18g01046 . Car18g00971 Sed06g1860 . . Bhi07g01373 Tan04g0900 Cmetu10g1083 Lac13g0456 Hepe01g1223 . . Cla05g02331 Cam05g2505 Cec05g2528 Cco05g2571 Clacu05g2499 Cmu05g2361 Cre05g2477 . . . . Lsi04g00292 . . Cme10g00293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 3 1 1 1 2 1 34