Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1224 ATGCGTGGGGAGGATCAAGAAGAGGAACATCATCAACATCATCAACATCATCAAGGAGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAGCTACAAAACAACAACAACAACAACAACGTCAACACTGATCATATTATATATGGAGGTCATCATCATCATCATGGAGGAGGGTTGATTTTCCCGGCTGAAGTCGTGTCGCCTGTTCTACAGTCGTGGCCACCGCTCAACCCGTTTATGATCCCTCCTCCGCCTCCGCCGCCGCCACCGACATCATTATGTTCATCGTCATCATATGGTAGTTTGTTTAACAGGAGACCTCCTAATTGTCTTCAATTTGCTTATGATGGTCCGTCTTCGGCGGACCACCTCGGCCGGATCATATCGACCACGCTTGGACCGGTGGTTCATCCAGGTTCAACGGCTCCCTTTGGGCTACAAGCAGAGCTTGGAAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACGGACAAAGCATCACTGCTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCGGAAACAAGTCCAATCCCAACCGAAGTGGACGAGGTAACTGTGGACGATGCCTCCGACGAGATGATCATAACCACCGGAGCAAAATTCGTCATAAAAGCCTCTCTTTGCTGCGAGGACCGCTCCGATCTCCTCCCCGACCTCATCAAAACGCTGAAATCCTTGCGTTTAAGGACTCTCAAAGCTGAAATCACAACCCTTGGTGGGCGAGTAAGAAATGTCTTGTTTGTCACTGCTGAAGAAGAAGGAGAAGAAGAAGATCAAGAACACAATTCTGATCATAATAATAATAATAATCACAATATTAGCTCCATTCAAGAAGCTCTCAAGGCTGTCATGGAAAAAACAGGATCAGGGGAGGATTCTTCTTCTGCAAATATTAAAAGACAAAGGACTAATAACATCAATATCGTCCTTTAA 1104 44.57 MRGEDQEEEHHQHHQHHQGECSQTIENMFQEQLLLHQQLQNNNNNNNVNTDHIIYGGHHHHHGGGLIFPAEVVSPVLQSWPPLNPFMIPPPPPPPPPTSLCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVTVDDASDEMIITTGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTAEEEGEEEDQEHNSDHNNNNNHNISSIQEALKAVMEKTGSGEDSSSANIKRQRTNNINIVL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77463147 77465882 - Hsped.01g12240.1 Hepe01g1224 560334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1224 367 MobiDBLite consensus disorder prediction 1 21 - -
Hepe01g1224 367 CDD bHLH_AtAIG1_like 167 244 - -
Hepe01g1224 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
Hepe01g1224 367 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Hepe01g1224 367 MobiDBLite consensus disorder prediction 309 329 - -
Hepe01g1224 367 MobiDBLite consensus disorder prediction 1 20 - -
Hepe01g1224 367 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
Hepe01g1224 367 Gene3D - 166 230 IPR036638 GO:0046983(InterPro)
Hepe01g1224 367 PANTHER TRANSCRIPTION FACTOR BHLH30 147 360 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1224 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 227 IPR036638 GO:0046983(InterPro)
Hepe01g1224 367 FunFam transcription factor bHLH30 167 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1224 Hepe-Chr1:77463147 Hepe05g0856 Hepe-Chr5:24791374 1.47e-43 dispersed
Hepe02g3308 Hepe-Chr2:82684783 Hepe01g1224 Hepe-Chr1:77463147 2.58e-28 transposed
Hepe04g1403 Hepe-Chr4:69673904 Hepe01g1224 Hepe-Chr1:77463147 1.39e-19 transposed
Hepe10g0422 Hepe-Chr10:4723977 Hepe01g1224 Hepe-Chr1:77463147 4.71e-33 transposed
Hepe01g1224 Hepe-Chr1:77463147 Hepe02g2732 Hepe-Chr2:75742883 1.05e-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54815 PF00010 HLH 5.80E-13 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1224 - - - 0.0