Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe01g1233 | ATGCTGGAGAAAGAGAGTCAATGTGTTGTTGTTACAGACCCACGTTTGGTGACTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTGGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACCTATATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATAGGTGCAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGTACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGAAATTCAAGAAGCTACAAAAGATGGAGTGAGAGTGAAAGTGATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCGAAAGCTCATCTCCAACAGCCGATCCCATCGTCCTGGAACGCATTTGTTTACATTATTGAAGGCGAAGGTGTCTTCGGCAGTTCAAAGGCGACGTCGACGACAGCGCATAACCTTCTTCTGCTCGGGTTCGGGGACGGTTTAGAGGTCTGGAATAAGTCAGCCAAGCCTCTGAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACTATTGATGATTTTGATAACTATACCAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGCAATTTCACTTGGCTTCTAA | 909 | 45.1 | MLEKESQCVVVTDPRLVTRKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKEIQEATKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQPIPSSWNAFVYIIEGEGVFGSSKATSTTAHNLLLLGFGDGLEVWNKSAKPLRFILVGGEPLSEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAAISLGF | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 77561440 | 77564852 | - | Hsped.01g12330.1 | Hepe01g1233 | 560343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe01g1233 | 302 | CDD | cupin_pirin_C | 177 | 253 | - | - | |
| Hepe01g1233 | 302 | Pfam | Pirin C-terminal cupin domain | 180 | 284 | IPR008778 | - | |
| Hepe01g1233 | 302 | PIRSF | Pirin | 13 | 293 | IPR012093 | - | |
| Hepe01g1233 | 302 | SUPERFAMILY | RmlC-like cupins | 15 | 294 | IPR011051 | - | |
| Hepe01g1233 | 302 | Pfam | Pirin | 34 | 127 | IPR003829 | - | |
| Hepe01g1233 | 302 | Gene3D | Jelly Rolls | 28 | 280 | IPR014710 | - | |
| Hepe01g1233 | 302 | CDD | cupin_pirin_N | 34 | 129 | - | - | |
| Hepe01g1233 | 302 | Gene3D | Jelly Rolls | 149 | 254 | IPR014710 | - | |
| Hepe01g1233 | 302 | PANTHER | PIRIN-RELATED | 8 | 295 | IPR012093 | - | |
| Hepe01g1233 | 302 | FunFam | pirin | 28 | 165 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe01g1233 | Hepe-Chr1:77561440 | Hepe05g1290 | Hepe-Chr5:60728926 | 2.02e-146 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe01g1233 | K06911 | - | csv:101216351 | 572.778 |