Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1235 ATGGGAGTGCTCGAATCTGTGATAAACATCGGCAGCGATCACGCTCAGGTCGTCCCCTTGACGTTGTTCGTCACCGTTCTCTGTTTATGCTTGGTTATTGGCCACTTGCTCGAAGAAAATCGATGGGTTAATGAATCCATCACTGCCATTATCATTGGAAGTGTTACTGGAGCGATCATATTGGTCTTTAGCAAGGGGAAAAATTCTCATATCCTAACTTTTAATGAAGAAGTGTTCTTCATATATCTTCTTCCACCAATAATTTTCAATGCTGGATTTCAAGTTAAAAAGAAGCAATTCTTCCATAACTTCTTGACCATTATGATGTTTGGGGTGATTGGTGTTTTTATATCTGCACTCATTATAACGGCTGGCAGCCAGTGGCTGTTTCCGAGGATGGGCTTCCATGGTCTGACAGCACGGGACTATGTTGCTATAGGTGCTATTTTTTCATCCACGGACACAGTATGCACCCTGCAGGTACTACACCAAGAGGAAACACCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTTCAGAAGATTGATATCACTAGGCTTAACAGCAAGACAGCCTTTCACCTTTTTGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACCACCGGGCTTCTTACATCATATATCCTGAAAACCTTATACTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAACGGTTTTAATGGCTTACCTATCGTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGGGTTATCATGTCGCACTATGCATGGCATAATGTGACTGATAGTTCAAAAATTACTACCAGGCATGTATTTGCAATGATGTCATTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATAACTAAATTAAGCTTGTGGAAGTTGCTTGGTACATATAGCATTATAGTCTTCTTGATATTGCTTGGTCGTGCAGCCTTTGTATTTCCCCTATCTGCTATATCTAATTACTTCATTAAGCGTGAAGATAGATCGACATCGTCTTCTATGATCTCATTAAAACAACAGATCGTTATATGGTGGGCTGGACTGATGAGAGGAGCTGTGTCCATTGCTCTGGCTTTCAAACAGTTCACATATTCTGGGGTTACATTGGATCCAACCCACGCAACAATGGTTACCATCACTACAGTTATTGTACTCTTCACTACGGTGGTATTTGGGTTTCTAACAAAGCCGCTCATAAGATGTCTGCTTCCTCTCAACCAAGCAACTAACAATGCGAGCAATTCCGGGCCGAAGTTCACTGAAGAGGATATAACTCTCCCTTTGCTCTCCATGCAAGAGTCTGCTGCAACTAATGTCCTGCGTGCAAAGGACAGTTTGTCAATGTTAATGGAGAGGCCTGTTTACACCATACATTTCTTTTGGAGGAAATTTGATGATACCTACATGAGACCTATATTTGGAGGGCCTCGCCGCAACCAACCTAGTGGTTCGGGTTGTTAG 1587 42.22 MGVLESVINIGSDHAQVVPLTLFVTVLCLCLVIGHLLEENRWVNESITAIIIGSVTGAIILVFSKGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISALIITAGSQWLFPRMGFHGLTARDYVAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNSKTAFHLFGDFCYLFSTSTVLGVTTGLLTSYILKTLYFGRHSSVRELAITVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTDSSKITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLLGTYSIIVFLILLGRAAFVFPLSAISNYFIKREDRSTSSSMISLKQQIVIWWAGLMRGAVSIALAFKQFTYSGVTLDPTHATMVTITTVIVLFTTVVFGFLTKPLIRCLLPLNQATNNASNSGPKFTEEDITLPLLSMQESAATNVLRAKDSLSMLMERPVYTIHFFWRKFDDTYMRPIFGGPRRNQPSGSGC 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77591897 77601170 + Hsped.01g12350.1 Hepe01g1235 560345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1235 528 Pfam Sodium/hydrogen exchanger family 34 442 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Hepe01g1235 528 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1235 528 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1235 528 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1235 528 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe01g1235 528 PANTHER SODIUM/HYDROGEN EXCHANGER 18 521 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Hepe01g1235 528 Gene3D - 139 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1235 Hepe-Chr1:77591897 Hepe09g1607 Hepe-Chr9:46355457 2.31e-204 dispersed
Hepe01g1235 Hepe-Chr1:77591897 Hepe03g0130 Hepe-Chr3:1569976 7.25e-207 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1235 - - - 0.0