Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1260 ATGGACTGGACCAGAGGCCCCGCCCTCGGCCGCGGCTCCTCCGCCACCGTCTATTTAGCCACAACCACCTCCTCCGGCCACCAATTCGCCGTCAAAACCACCGACCTCTCTTCATCGGCCTTCTTGCAGAAGGAACACACTCTTCTCTCCAATTTGAACTCTCCATACCTAATCAACTGCTTAGGTTTCGATGTCGAAATTCAAACCTCCAGACCGCCGGTGTTCAATCTATTCATGGAGTATTTGCCGGAGGGTACGCTGTGGGATGCGATTCAGAGCCACGGCGGCCGGATGGACGAATCGACGATCGGAGCGTATTCGCGCCAGATTCTCAAAGGATTGGACTACCTTCACGCTAATGGATTGGCGCATTGCGATATCAAGAGCCGGAATCTGTTATTGAGTGGTGACGGTGAGTGTTTGAAAATCGCCGATCTTGGTTGTGCGAAATTTGTGGATGGAAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCGGAGGTTGCCAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCGTTTGGATGTACGGTCATTGAAATGGCTACCGGCGATCATCCGTGGCCGGAGATGGAGGATCCAGTGTCGGCGTTGTATAGAATTGGGTTTTCCGGCGAGTCGCCGGAGGTTCCGCAGTGGTTGTCGGAGAGGGCGAGGGATTTTGTCCGCAAGTGTTTGATAAAAGACCCGAAAGAACGATGGAGTGCGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTAGACTCTGAATCGGAAATCGAATGCTCGAGGATGAAGACGACGAGTTCTTCTCCAAGCTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGCAGACTCCATTGAAGGTCACCCATCAAGCTTCTTCGGCGGATTCTCCGGCTGAGAGGATTAGAAGTTTGGCTGGAAATTTGTCTTCCGATTGCGATTGGGTTTGGGAAGGGGATGATCGAGAATGGGTCTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCTGATTTTTCTGCTACAATTGAAGAAGAAGAAGAAGAGATGGAAAATTTGAATTTAGAATTTGAAGAAGATTTTGTGTTATTATATTTGGGTGATGATGATTTTAGTATTGTGAACAATGGGAGAGAAGGATTAGAAATAGAATTTGAGAGTGAATCTATGTTGAAAACTATGAAATTTGAAGCTAATGAGTATTATTTTTCTTCATTAATGCAAATTGATCTTTTGTTGCCTCATGATCTTCTTCTTCTCATCACTTTGTTCAAGAATTATAGTTTGATCAAAGAAGTTTTTGTAAGCCAATTTACTTGCACAATCACAACTCACAATTCACAACAACATTTTAATCTTTCACTTTAA 1422 46.34 MDWTRGPALGRGSSATVYLATTTSSGHQFAVKTTDLSSSAFLQKEHTLLSNLNSPYLINCLGFDVEIQTSRPPVFNLFMEYLPEGTLWDAIQSHGGRMDESTIGAYSRQILKGLDYLHANGLAHCDIKSRNLLLSGDGECLKIADLGCAKFVDGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGESPEVPQWLSERARDFVRKCLIKDPKERWSAKRLLEHPFLQGLDSESEIECSRMKTTSSSPSCVLDQSFWDSMEDLQTPLKVTHQASSADSPAERIRSLAGNLSSDCDWVWEGDDREWVLIRNNGVGGGSHGNGSVSSDFSATIEEEEEEMENLNLEFEEDFVLLYLGDDDFSIVNNGREGLEIEFESESMLKTMKFEANEYYFSSLMQIDLLLPHDLLLLITLFKNYSLIKEVFVSQFTCTITTHNSQQHFNLSL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77888707 77890147 + Hsped.01g12600.1 Hepe01g1260 560370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1260 473 SMART serkin_6 3 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1260 473 CDD STKc_MAPKKK 2 257 - -
Hepe01g1260 473 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 258 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe01g1260 473 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Hepe01g1260 473 Gene3D Transferase(Phosphotransferase) domain 1 2 316 - -
Hepe01g1260 473 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Hepe01g1260 473 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1260 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1260 473 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1260 473 Coils Coil 354 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1260 Hepe-Chr1:77888707 Hepe08g0454 Hepe-Chr8:3987877 6.30e-103 dispersed
Hepe10g1336 Hepe-Chr10:49487216 Hepe01g1260 Hepe-Chr1:77888707 8.82e-64 transposed
Hepe01g1260 Hepe-Chr1:77888707 Hepe04g1749 Hepe-Chr4:72521792 1.38e-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72460 PF00069 Pkinase 1.80E-54 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1260 K20716 - csv:101205426 629.402