Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1265 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGCAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGCGGAGGACCGGCATCGTCGGAATCCGAGCCGCGGCGGAGTCTCCGCCGCCGGAATGTGAGGTACAGCGTCGATTTCGACGACTTTCTCGAAGAAGATGACGAGGATGAGGAAGAGGACGAGAGGAGGCGAGAGAAGAAGCTCAAGCTTGTCGTGAAGCTGAGCCAGCAGGGCAGAGACGGAGAGAATCTATCTCCAGTGACCGGACTTTCTAGGTCAGAGGCGCGTGATGAACACGCGCCGGAGTACGGCTCGTCGGCATCGGAAGGGGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGACGGTGGTGGTGAAGAAGAAGAAGAGGATGAAGATGAAGATTACGACGATCAAATTCGTGGGGATGATGAAAACGAAGACGATGAGATTGATGAGGAAAGGGTGGGAGGAGGGAATGTGGGCTCAAAAGGGTCCGACTCTGTTCCAGGGACTCCCTCAGATCGATCATCCAGGCTGCCATTACCTGATAAGAAGACAATGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGATTATCACGATGTCATTGAGCATCCTATGGACTTTGCTACCGTGAGGAATAAGTTGGCCAACGGATCATATTCAACTTTGGGGCAGTTTGAGAGTGACATTTTTCTGATATGCTCAAACGCAATGCAATACAATTCATCAGAAACCATTTACCACAAACAGGCACGTTCCATTCAAGAGCTAGCCAAGAAGAAATTCGAGAGGTTAAGAATTGAAGTTGAACGCTCTGAGAAAGAGTTGAAGTTAGAGCAGAGTACAAAATCCAATTCTTACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGATTTTGCAGGAACCCATTGGATCTGATTTTTCCTCGGGGGCAACCCTTGCTGCCACGGGAGATGTACAGAACAGTTCCAATCCAATCCAAGGTGTTAACTGTGAGGTACCTAGCAATATTGATGGGCAAGTAGAGGGTACTTCCTCCCTCCTTGATACTAATAATCAGGACAAGGCTGAAGAGCTCTTCTCAGGTAAGGGTCTTCTAGGTAAATTGGGCAGAAAGATATCTGTGCTTGATGACAATCGCCGTGCAACTTACAACACATCTAATTCACCAGCTCCAAGATCAGAGTCAATATTTTCAACCTTTGAGGATGAAATAAGACAGCTTGTTGCGGTTGGGCTTCATGCAGAGTATTCCTATGCTAGGAGTCTGGCTCGATTTGCTGCAACACTTGGTCCTATCGCTTGGAAAGTTGCCTCCCAGAGGATTGAGCAGGCCGTACCTGTTGGATGTAAATTCGGCCGTGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCTGTATTAATGTTTGAGAAGCTCAACCAGAAGGAACCTGGTTTCAATAGTAACTTGCATTCTACCAACGAATTAAGAAAGGATGGAAAGCCTTCAGATACTCCTTTGCCGAAGAAGGAACATTCTCTTAGTGCACCAAGTACAGAAGTGAATGGTCTTGCTAGAGGATCCACCTTAGATGGGAAACCATCTTTCTTTAGGTCCACCACCCCAAATCCCGGGTTTTCTCCACAGCAAAACCTGCAGACCAAGAATTTTACTGAGGGAGAGAAGGTTAAAAAGCAAGTTGAGTTAAATTCCTTGCCCTCACCAAAACAAAATAAAGTTGATTTTGGTGTAGAGAAGCATCTTCCAGTCATTCCGAATATGACTGCTTCTAGGTCTAGAGATATGACGTCGGTAAACTTAAATCTTGTGCAATCTGCACCTTATAAACTGCCTGGTGTTAATGGCGTTGTAACCGGAGGATTGCCTAATGGAAAATTCCCAAGCAATTGTTTGAATAGTCCACGGGCTGCTTTATCATCTTCTAGCTTGCCTTCTCATACAGCCGCAGTGGCAACTTCCCATGGACAGGACATGGGTCCCGGTAAGCCAGTACAGTTGATGAGAATGATGTCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCGTCTGATTCTCCACCAGCTTTGTCATCAGTCCCTTCTGCAATGAGAGACGATTCTAATAATGCTGCAGCAGTAGCTTCTCGTGCATGGATGTCCATTGGGGCTGCTGGAGGGTTTAAACAAGTCAGAGATAATTCCTCACCTAAAAGTCAAATCTCTGCAGATTCACTGTATAATCCAGCTCGGGAGTTTCATCCGCAAATGACACGAGCATGGGCGGAGTTTCGTGCTGGAGGCAATCAGCTTCAGTCTGAGAAGAGCAATTTCCCTTTGCAGGCATTTGTTCCACAAGCCAATCTTGTACCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTTCAGGCCGACATGTCTAAGTTTCAGTTGCAGTCGACTTGGCGAGCTCTCAGCCCACATAACCAGCCAAGGAGGAAACAGGAAATGCTTCCTCCCGACTTGAATATCGATTTTCAATCTCCTGGGTCGCCTGTGAAACAATCCTCTAGTGTTTTGGTTGACTCCCAGCAGCCAGACCTGGCTTTGCAACTTTAA 2676 46.75 MGQIVKRKKKGRPSKADLARRSGGGPASSESEPRRSLRRRNVRYSVDFDDFLEEDDEDEEEDERRREKKLKLVVKLSQQGRDGENLSPVTGLSRSEARDEHAPEYGSSASEGEDEPERKPLKKRRIDGGGEEEEEDEDEDYDDQIRGDDENEDDEIDEERVGGGNVGSKGSDSVPGTPSDRSSRLPLPDKKTMELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLGQFESDIFLICSNAMQYNSSETIYHKQARSIQELAKKKFERLRIEVERSEKELKLEQSTKSNSYIKKQPPKKPFFRILQEPIGSDFSSGATLAATGDVQNSSNPIQGVNCEVPSNIDGQVEGTSSLLDTNNQDKAEELFSGKGLLGKLGRKISVLDDNRRATYNTSNSPAPRSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFAATLGPIAWKVASQRIEQAVPVGCKFGRGWVGEYEPLPTPVLMFEKLNQKEPGFNSNLHSTNELRKDGKPSDTPLPKKEHSLSAPSTEVNGLARGSTLDGKPSFFRSTTPNPGFSPQQNLQTKNFTEGEKVKKQVELNSLPSPKQNKVDFGVEKHLPVIPNMTASRSRDMTSVNLNLVQSAPYKLPGVNGVVTGGLPNGKFPSNCLNSPRAALSSSSLPSHTAAVATSHGQDMGPGKPVQLMRMMSERAPKQENSSNQSSSDSPPALSSVPSAMRDDSNNAAAVASRAWMSIGAAGGFKQVRDNSSPKSQISADSLYNPAREFHPQMTRAWAEFRAGGNQLQSEKSNFPLQAFVPQANLVPNEQQLQNRSMIYPQLVQADMSKFQLQSTWRALSPHNQPRRKQEMLPPDLNIDFQSPGSPVKQSSSVLVDSQQPDLALQL 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77936887 77943029 + Hsped.01g12650.1 Hepe01g1265 560375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1265 891 PANTHER BROMODOMAIN CONTAINING PROTEIN 6 890 IPR051831 -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 700 727 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 131 159 - -
Hepe01g1265 891 SUPERFAMILY Bromodomain 171 288 IPR036427 GO:0005515(InterPro)
Hepe01g1265 891 Coils Coil 278 305 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 750 771 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 662 730 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 94 130 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 662 678 - -
Hepe01g1265 891 ProSitePatterns Bromodomain signature. 207 263 IPR018359 -
Hepe01g1265 891 Pfam Bromodomain 196 275 IPR001487 GO:0005515(InterPro)
Hepe01g1265 891 MobiDBLite consensus disorder prediction 1 15 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 753 767 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 867 891 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 513 527 - -
Hepe01g1265 891 MobiDBLite consensus disorder prediction 864 891 - -
Hepe01g1265 891 PRINTS Bromodomain signature 218 234 IPR001487 GO:0005515(InterPro)
Hepe01g1265 891 PRINTS Bromodomain signature 252 271 IPR001487 GO:0005515(InterPro)
Hepe01g1265 891 PRINTS Bromodomain signature 234 252 IPR001487 GO:0005515(InterPro)
Hepe01g1265 891 MobiDBLite consensus disorder prediction 32 48 - -
Hepe01g1265 891 CDD Bromodomain 189 285 - -
Hepe01g1265 891 Gene3D - 188 309 IPR036427 GO:0005515(InterPro)
Hepe01g1265 891 MobiDBLite consensus disorder prediction 1 190 - -
Hepe01g1265 891 ProSiteProfiles Bromodomain profile. 201 271 IPR001487 GO:0005515(InterPro)
Hepe01g1265 891 MobiDBLite consensus disorder prediction 504 544 - -
Hepe01g1265 891 SMART bromo_6 182 290 IPR001487 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1265 K22184 - - csv:101204699 1399.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1265 Hepe-Chr1:77936887 Hepe01g2345 Hepe-Chr1:87990182 3.41e-60 dispersed
Hepe01g1265 Hepe-Chr1:77936887 Hepe02g0368 Hepe-Chr2:3453572 8.80e-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39