Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1303 ATGTTTGATGAAGAGACTAACTCTGATTTGAAGTTAATAACATTCCCACCATTTTTATATATAGGCAAAAGCTACATTCACGTATGCTGCAAGAAAGACCCCAAATTCAAGCTAAAACCAGCAAAGAAGACGAAGTTCTTCCCGAGACAGAACGGCGATCTCTCGCTCACCTACGATGTCCTCCAAGCTTATGGCAACAACTATCTCGCACAAGTCACCATCGACAACATCAACCCTCTAGGCCGACTCGACCATTGGAACTTAACATGGGAATGGACTAGAGGAGAATTTATTTCCACAATGCGTGGAGCTTACACTCGCAAATCTGACCATTCTACCTGCATCTTTGGCCCTGTGGGCCAATCTTATCAAGATCTCGACTTCTCGCACATCATGAACTGCGAGAAGAACCCTGTCATCGCCGACCTCCCCACCGATCGAGCCAACGATTCCAAAGTCGGAAAGTTACCGTTTTGCTGCAAAAATGGCACCATCTTACCGGCATTGATGGATCAAACCAAAGCAAGGTCTATTTTCCAACTTCAAGTCTATAAGCTTCCCCCTGACTTCAACATAACAGCCTTGTACCCTCCTCAAAAATGGAACATCAAAGGCATTCTTAACCCCAATTACAAATGTGGACTTCTCATTAGAGTGGATCCAACACTATTTCCTGACCCAAATGGCCTTCAAGCCACAAGCACTTCCATTGCAAGTTGGCAAGTGGTTTGCAACATCACAGTTCCCAAACCCAAACAATCTAGATGTTGTGTTTCCTTCTCTGCTTATTACAATGACTCTGTTATCCCTTGCAGCACTTGTGCTTGTGGGTGTGATCAAACTGATCAATCTTGCAACCCAAGTTCTTCCCCAATGCTGCTTCCCCCAGAAGCACTTTTGGTTCCATTTGACAATAGGACTCTAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTTCCCATCCCCAAAAGGCTCCCCTGCCCAGACAATTGTGGGGTTAGTTTGAATTGGCATATAAACTCAGATTATAGCAGCGGTTGGACTGCAAGAATCACTCTTTTCAATTGGGAAGAATACCCTTTTGAGGATTGGTTTGCTGCTGTTCAATTGAACTCGAAAGCTGCTAAAGGCTATGAAGATACTTATTCCTTCAATGGGACTAAACTCTCACTAGATTTGATCAAGAACACAATCTTGTTCCAAGGATTGGAGGGTTTGAATTACCTTATGGGGGAGATGAATGGGACGGACCCGAGATTCGATCCGCGAGTACCGGGAAAGCAGCAATCGGTGATCTCGTTCACTAAGAAGAACTTGAGAAACTTCAATATAAGGGAAGGAGATGGATTTCCTTCAAAGGTGTATTTCAATGGACAAGAATGTGCACTTCCTCCTCACATTCCTTTGGGAAATGGTGCTGCTCATAGCCTCCAACCTCAAGTGCTTCTGCTCACAGTTGTGGCCTTTTTCATTCTCTTCACTGATGGCTTTCATTGA 1497 44.22 MFDEETNSDLKLITFPPFLYIGKSYIHVCCKKDPKFKLKPAKKTKFFPRQNGDLSLTYDVLQAYGNNYLAQVTIDNINPLGRLDHWNLTWEWTRGEFISTMRGAYTRKSDHSTCIFGPVGQSYQDLDFSHIMNCEKNPVIADLPTDRANDSKVGKLPFCCKNGTILPALMDQTKARSIFQLQVYKLPPDFNITALYPPQKWNIKGILNPNYKCGLLIRVDPTLFPDPNGLQATSTSIASWQVVCNITVPKPKQSRCCVSFSAYYNDSVIPCSTCACGCDQTDQSCNPSSSPMLLPPEALLVPFDNRTLKAKAWAKIKHFPIPKRLPCPDNCGVSLNWHINSDYSSGWTARITLFNWEEYPFEDWFAAVQLNSKAAKGYEDTYSFNGTKLSLDLIKNTILFQGLEGLNYLMGEMNGTDPRFDPRVPGKQQSVISFTKKNLRNFNIREGDGFPSKVYFNGQECALPPHIPLGNGAAHSLQPQVLLLTVVAFFILFTDGFH 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78236816 78238838 - Hsped.01g13030.1 Hepe01g1303 560413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1303 498 Pfam COBRA-like protein 68 247 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Hepe01g1303 498 PIRSF COBRA 24 496 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Hepe01g1303 498 PANTHER COBRA-LIKE PROTEIN 7 22 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1303 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1303 Hepe-Chr1:78236816 Hepe07g1196 Hepe-Chr7:28357473 4.88e-264 dispersed
Hepe01g1303 Hepe-Chr1:78236816 Hepe02g0921 Hepe-Chr2:11095838 6.22e-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g458 . . . . Bpe09g00187 Bpe08g01136 . Bma13g01035 Cmo16g00909 Cmo04g01012 . . . . Sed07g1929 . . Bhi09g01934 Tan01g4517 Cmetu06g0182 . Hepe01g1303 . . Cla10g00527 Cam10g0521 Cec10g0538 Cco10g0528 Clacu10g0543 Cmu10g1369 Cre10g0772 Cone6ag0084 . Cone14ag1126 . Lsi04g01234 Csa03g00533 . Cme06g02279 . Blo10g00811 . Bda12g00896 . . Bma07g01310 . . . . Cma04g00942 Cma16g00850 Car04g00880 Car16g00854 . Cpe01g00854 . . . . . . . Cla05g01523 Cam05g1636 Cec05g1640 Cco05g1673 Clacu05g1626 Cmu05g1523 . Lsi05g00621 . Chy06g01797 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0285 . 48 447 COBRA Gene Family AT5G60920 79.6 4.1e-209 724.2
Hepe02g0922 . 42 479 COBRA Gene Family AT5G60920 69.2 6.3e-194 673.7
Hepe09g0286 . 115 514 COBRA Gene Family AT5G60920 68.9 1.7e-178 622.5
Hepe02g0921 . 64 459 COBRA Gene Family AT5G60920 67.9 2.2e-178 622.1
Hepe07g2448 . 19 416 COBRA Gene Family AT5G60920 61.7 1.1e-150 530.0
Hepe07g0518 . 57 442 COBRA Gene Family AT5G60920 54.8 7.6e-131 464.2
Hepe09g0285 . 18 452 COBRA Gene Family AT3G02210 74.1 1.4e-207 719.2
Hepe02g0922 . 12 485 COBRA Gene Family AT3G02210 67.6 1.2e-196 682.9
Hepe02g0921 . 38 462 COBRA Gene Family AT3G02210 66.6 3.4e-180 628.2
Hepe09g0286 . 87 513 COBRA Gene Family AT3G02210 66.5 3.7e-179 624.8
Hepe07g2448 . 5 412 COBRA Gene Family AT3G02210 60.2 1.6e-153 539.7
Hepe07g0518 . 27 458 COBRA Gene Family AT3G02210 54.7 5.8e-140 494.6
Hepe09g0285 . 16 446 COBRA Gene Family AT3G29810 73.9 5.8e-201 697.2
Hepe02g0922 . 26 485 COBRA Gene Family AT3G29810 66.1 6.6e-189 657.1
Hepe02g0921 . 47 461 COBRA Gene Family AT3G29810 66.5 2.6e-177 618.6
Hepe09g0286 . 98 496 COBRA Gene Family AT3G29810 67.7 5.4e-175 610.9
Hepe07g2448 . 7 419 COBRA Gene Family AT3G29810 59.5 2.9e-152 535.4
Hepe07g0518 . 39 456 COBRA Gene Family AT3G29810 53.8 6.9e-138 487.6
Hepe02g0921 . 42 372 COBRA Gene Family AT5G15630 83.4 6.9e-178 620.2
Hepe09g0286 . 92 423 COBRA Gene Family AT5G15630 83.4 7.7e-177 616.7
Hepe09g0285 . 31 361 COBRA Gene Family AT5G15630 73.5 4.2e-151 531.2
Hepe02g0922 . 27 357 COBRA Gene Family AT5G15630 68.3 6.3e-147 517.3
Hepe07g2448 . 5 323 COBRA Gene Family AT5G15630 64.3 4.7e-134 474.6
Hepe02g0922 . 8 218 COBRA Gene Family AT5G60950 58.2 2.4e-64 242.3
Hepe09g0285 . 18 224 COBRA Gene Family AT5G60950 56.3 2.6e-63 238.8
Hepe02g0921 . 41 240 COBRA Gene Family AT5G60950 54.2 3.3e-58 221.9
Hepe09g0286 . 111 291 COBRA Gene Family AT5G60950 56.4 1.8e-56 216.1
Hepe07g2448 . 15 195 COBRA Gene Family AT5G60950 50.3 1.7e-46 183.0
Hepe07g0518 . 30 439 COBRA Gene Family AT1G09790 59.6 3.2e-151 531.9
Hepe09g0286 . 101 494 COBRA Gene Family AT1G09790 53.7 3.3e-132 468.8
Hepe09g0285 . 32 432 COBRA Gene Family AT1G09790 53.1 7.5e-132 467.6
Hepe02g0921 . 36 444 COBRA Gene Family AT1G09790 51.5 5.3e-130 461.5
Hepe05g1403 . 31 645 COBRA Gene Family AT4G16120 65.7 8.8e-254 873.2
Hepe07g1196 . 67 676 COBRA Gene Family AT4G16120 53.6 7.8e-202 700.7
Hepe01g1303 . 22 469 COBRA Gene Family AT4G16120 54.4 6.5e-156 548.1
Hepe05g1403 . 6 651 COBRA Gene Family AT3G16860 61.9 7.6e-242 833.6
Hepe07g1196 . 58 668 COBRA Gene Family AT3G16860 51.1 2.3e-190 662.5
Hepe01g1303 . 22 485 COBRA Gene Family AT3G16860 51.6 4.6e-146 515.4
Hepe05g1403 . 9 632 COBRA Gene Family AT5G49270 61.8 1.1e-240 829.7
Hepe07g1196 . 59 661 COBRA Gene Family AT5G49270 51.4 2.5e-192 669.1
Hepe01g1303 . 23 491 COBRA Gene Family AT5G49270 50.6 1.1e-150 530.8
Hepe07g1196 . 1 680 COBRA Gene Family AT3G20580 59.6 6.6e-249 857.1
Hepe05g1403 . 24 647 COBRA Gene Family AT3G20580 53.2 6.1e-202 701.0
Hepe01g1303 . 26 492 COBRA Gene Family AT3G20580 61.6 4.4e-184 641.7
Hepe07g1196 . 51 681 COBRA Gene Family AT4G27110 60.7 2.9e-236 815.1
Hepe05g1403 . 27 647 COBRA Gene Family AT4G27110 52.0 1.6e-194 676.4
Hepe01g1303 . 26 468 COBRA Gene Family AT4G27110 63.3 1.7e-175 613.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55