Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1307 ATGGCAGGAAAAAGCATGTTCCGCTATGCTGATGGCATCGACAAGCTGCTGATGTTTTTCGGGACTCTGGGCAGCATAGGAGATGGATCGCAGATCCCTCTCACGATGTTCCTTCTTAAGGATGTGATCAATGCTTATGGAGACAAAAACAGTGGCTTGACAAACGATATGGTTGACACGTTTGCACTGCGTCTACTTTATGCTGCAGTTGGAGTCGGACTTTCAGCTTTCGTGGAGGGATTGTGTTGGGCAAGAACAGCAGAGAGACAGACATCAAGGATGAGAATGGAATATTTGAAATCTGTGCTTAGACAAGAAGTTAGTTTCTTTGATACCCAAACTGGTTCGATAACTCATGAGGTCGTCTCCCTCATTTCCTCTGATGCCAGCTCAATTCAAGTTGCCATATGTGAAAAGATACCTGATTGCCTTGCTTACATGTCAACATTCTTCTTCTGCCACATATTTGCCTTTATAGTATCATGGAGATTGACATTTGCAGTCCTCCCACTCTCAGTCATGTTCATTGGTCCAGGGCTTGTGTTTGGCAAAATTATGATGGACCTGATAATGAAGATGATCGAATCTTATGGTGTTGCTGGTGGGATTGCAGAGCAAGCAGTATCTTCAATAAGAACTGTATACTCATATGTAGGAGAAAGTCAAACACTGGAAAAATTCAGCCAAGCACTCCAAAAAAGTATGGAATTTGGGATTAAGTCCGGTTTTGTGAAGGGATTGATGCTTGGAAGTATGGGAGTCATTTATGCTGGTTGGGGTTTCCAAGCTTGGGTTGGCACTTATTTGATTACTGAGAAAGGAGAAAAAGGAGGCAATGTTTTTATAGCTGGTTTCAATGTTCTAATGGGAGGACTGAGTATATTGAGTGCACTTCCTCATCTAACCTCTATCACAGAGGCAACATCTGCAACTGCTCGTATCCTTGAAATGATCGATCGTGTTGCCGAGACAGACAGAGAAGACAAAAAGGAGAAAGCTCTATCACACGTGAAAGGAGAAATTGAATTCAAAAACGTATATTTTAGTTATCCATCAAGGCCAGATAGTCCTGTATTACAAGGATTGAATCTGAAGGTTCCAGCAGGGAAGAGAGTAGGACTGGTAGGAGGAAGTGGGTCTGGGAAGTCCACAGTTATCTCACTGCTCGAAAGGTTTTATGATCCCACTGATGGAGAAATACTCTTGGATGGACATAAAATAAAAAGACTTCAGCTAAAATGGCTGAGATCTCAAATGGGTCTGGTGAATCAGGAACCTGTTCTATTTGCAACTTCAATAAAAGAGAACATAATGTTTGGAAAAGATGGATCTTCAATGGAACAAGTGATAGATGCAGCTAAAGCTGCAAACGCACATGACTTCATCGTTAGGCTGTCAGAAGGTTATGAGACTCAAGTTGGTCAATTCGGTTTCCAAATGTCTGGAGGTCAAAAGCAACGGATTGCCATAGCAAGAGCTCTTCTTCGAGATCCAAAAATACTGCTACTTGATGAAGCAACCAGTGCACTGGATGCACAATCTGAACAAATGGTACAGGAAGCAATTGATAAGGCATCAAAAGGAAGGACGACAATCACCATAGCACATCGTCTTTCAACAATAAAAACAGCACATCAAATTGTAGTTCTTAAAGCTGGGCAAGTAATTGAGTCAGGTTCACACAATGAGCTGATACTGTTGAACAATGGACAGGGTGGGGAGTATCTACGGATGGTGCAGTTGCAGCAGATGGCAGTGCAGAATGAAACTTCCAATGATTCCAACATTGAAATGGATAGAAGATATCGTCATAGGATGAGTACTCCCGCAAGCCCAATCAGTGTAAGATCCAGTGGACATAGTACCCCAGTATTATTTCCCTTCAGCACAGCAATGTCTGTCTCCATGGGAACACCCTACTCTTACTCCGTCCAATTCGATCCCGATGATGAAAGCTTTGATGAAGACAAAAAACATCCAGCTCATTCTTCTCCTTCCCAATGGCGTTTGCTGAAAATGAATGCACCTGAATGGAGACGAGCGCTGCTTGGATGTTTAGGTGCTCTAGGCTCAGGAGCAGTGCAACCCATTAATGCATATTGCGTAGGAGCACTCATATCAGTTTATTTTCGCGCTAATGAGCCCGACATTCGGTCTAAATCTAGAAAATTATCACTCATCTTCTTAGGCATTGGCCTTTTCAACTTCTTAACAAATATCCTGCAACATTACAATTTTTCTATCATGGGAGAAAGACTAACCAAGCGGGTGCGTGAGAAAATACTTGAAAAGCTTATGACATTTGAAATTGGATGGTTTGATCAAGATGAGAACACAAGTGCAGCCATTTGTGCAAGGTTATCAACTGAAGCCAACATGGTCCGTTCCCTTGTTGGAGACAGAATGTCATTACTGGTCCAAGCAATTTTTAGTGCAGCCTTTGCTTACAGTGTTGGACTTGTTCTCTCATGGAGGTTAACTCTGGTGATGATTGCAGTGCAGCCACTAGTCATTGGTAGCTTCTATGCAAGGAGTGTGTTGATGAAGAGCGTGGCTGAAAAAGCCCGAAAAGCACAAAAAGAAGGTAGCCAAGTTGCAAGTGAAGCTGTAATAAACCATAAAACTATCGTTGCATTCCAATCTCAGAAAAAGATACTCGGGCTCTTCGCTGCCACCCTGAAAGCTCCTAAGAAAGAGAGTGCTAGACAGTCTTGGATATCTGGCCTTGGCCTATTCAGCTCCCAGTTCTTTAATACTGCTGCAACAGCTTTGGCCTACTGGTATGGTGGGAGGCTATTGACACAAAATTTGATATCCCCAGAACACATCTTTCAAGCATTCTTGATATTGCTATTCACTGCATATATCATAGCAGACGCTGGAAGTATGACTTCTGATATATCTAGAGGAAGCAATGCTGTTGGATCAGTTTTAGCAATCCTAGACAGGACAACTGAGATTGATCCAGATAACAAATCAAGGAGGGATGTCAAAAGACAGATAAAGGGTAAAGTGGAGCTCAGGAGTGTTAGCTTCTCATATCCAACAAGACCGGATCAGATTGTTTTAAGGGGTATGAGCCTTAAAATTGATGCAGGAAAAACAGTTGCGCTGGTGGGGCAAAGTGGTTCTGGAAAATCTACTGTTATTGGACTTATTGAAAGGTTTTATGATCCCTTAAGCGGATCTATACACATTGATGAACAAGACATTAAGAGCTACAATTTGAGATGGTTAAGGTCACAAATTGCATTAGTCAGTCAAGAGCCAACTCTTTTTGCTGGAACTATCAGAGAAAACATTGCCTATGGAAAAGAGGAGGCAAGGGAATCAGAGATCAGAAAAGCAGCTGTTCTTGCCAATGCTCATGAATTTATAAGTGGAATGAAAGATGGGTACAATACATACTGTGGAGAGAGAGGAGCTCAGCTATCGGGAGGACAAAAGCAAAGAATCGCACTGGCTCGAGCAATCCTGAAGAACCCATCAATCCTTCTGCTAGATGAGGCCACAAGCGCACTCGACAGCGTATCAGAGAATTTGGTGCAGGAAGCCCTGGAGAAGATGATGGTTAGCAGAACTTGCATCATCGTCGCTCACCGATTATCGACGATTCAGAAGGCGAACACCATCGCCGTGATCAAGAACGGGAAAGTTGCGGAACGAGGATCGCACAGTGAGCTGATTGCAATGGGGCGCCGTGGAGAGTATTATTCGCTGACGAAATCGCAGTCCGGAATCTTTCCTCCTCGTTGA 3756 43.02 MAGKSMFRYADGIDKLLMFFGTLGSIGDGSQIPLTMFLLKDVINAYGDKNSGLTNDMVDTFALRLLYAAVGVGLSAFVEGLCWARTAERQTSRMRMEYLKSVLRQEVSFFDTQTGSITHEVVSLISSDASSIQVAICEKIPDCLAYMSTFFFCHIFAFIVSWRLTFAVLPLSVMFIGPGLVFGKIMMDLIMKMIESYGVAGGIAEQAVSSIRTVYSYVGESQTLEKFSQALQKSMEFGIKSGFVKGLMLGSMGVIYAGWGFQAWVGTYLITEKGEKGGNVFIAGFNVLMGGLSILSALPHLTSITEATSATARILEMIDRVAETDREDKKEKALSHVKGEIEFKNVYFSYPSRPDSPVLQGLNLKVPAGKRVGLVGGSGSGKSTVISLLERFYDPTDGEILLDGHKIKRLQLKWLRSQMGLVNQEPVLFATSIKENIMFGKDGSSMEQVIDAAKAANAHDFIVRLSEGYETQVGQFGFQMSGGQKQRIAIARALLRDPKILLLDEATSALDAQSEQMVQEAIDKASKGRTTITIAHRLSTIKTAHQIVVLKAGQVIESGSHNELILLNNGQGGEYLRMVQLQQMAVQNETSNDSNIEMDRRYRHRMSTPASPISVRSSGHSTPVLFPFSTAMSVSMGTPYSYSVQFDPDDESFDEDKKHPAHSSPSQWRLLKMNAPEWRRALLGCLGALGSGAVQPINAYCVGALISVYFRANEPDIRSKSRKLSLIFLGIGLFNFLTNILQHYNFSIMGERLTKRVREKILEKLMTFEIGWFDQDENTSAAICARLSTEANMVRSLVGDRMSLLVQAIFSAAFAYSVGLVLSWRLTLVMIAVQPLVIGSFYARSVLMKSVAEKARKAQKEGSQVASEAVINHKTIVAFQSQKKILGLFAATLKAPKKESARQSWISGLGLFSSQFFNTAATALAYWYGGRLLTQNLISPEHIFQAFLILLFTAYIIADAGSMTSDISRGSNAVGSVLAILDRTTEIDPDNKSRRDVKRQIKGKVELRSVSFSYPTRPDQIVLRGMSLKIDAGKTVALVGQSGSGKSTVIGLIERFYDPLSGSIHIDEQDIKSYNLRWLRSQIALVSQEPTLFAGTIRENIAYGKEEARESEIRKAAVLANAHEFISGMKDGYNTYCGERGAQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSENLVQEALEKMMVSRTCIIVAHRLSTIQKANTIAVIKNGKVAERGSHSELIAMGRRGEYYSLTKSQSGIFPPR 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78271018 78277136 - Hsped.01g13070.1 Hepe01g1307 560417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1307 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 341 577 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe01g1307 1251 SUPERFAMILY ABC transporter transmembrane region 4 320 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe01g1307 1251 Gene3D - 995 1247 IPR027417 -
Hepe01g1307 1251 SUPERFAMILY ABC transporter transmembrane region 669 984 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe01g1307 1251 PANTHER ABC TRANSPORTER B FAMILY 4 606 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Hepe01g1307 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 987 - -
Hepe01g1307 1251 Pfam ABC transporter transmembrane region 683 954 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe01g1307 1251 Pfam ABC transporter transmembrane region 18 290 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe01g1307 1251 FunFam ABC transporter B family member 15-like 6 343 - -
Hepe01g1307 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 314 - -
Hepe01g1307 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe01g1307 1251 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe01g1307 1251 Pfam ABC transporter 1023 1172 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe01g1307 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 582 IPR027417 -
Hepe01g1307 1251 FunFam ABC transporter B family member 4 331 590 - -
Hepe01g1307 1251 SMART AAA_5 368 553 IPR003593 GO:0016887(InterPro)
Hepe01g1307 1251 SMART AAA_5 1032 1225 IPR003593 GO:0016887(InterPro)
Hepe01g1307 1251 CDD ABC_MTABC3_MDL1_MDL2 341 582 - -
Hepe01g1307 1251 Pfam ABC transporter 359 508 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe01g1307 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1244 IPR027417 -
Hepe01g1307 1251 ProSitePatterns ABC transporters family signature. 480 494 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe01g1307 1251 CDD ABC_MTABC3_MDL1_MDL2 1005 1244 - -
Hepe01g1307 1251 Gene3D - 339 595 IPR027417 -
Hepe01g1307 1251 Gene3D ABC transporter type 1, transmembrane domain 65 977 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe01g1307 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 969 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe01g1307 1251 FunFam ABC transporter B family member 4 995 1247 - -
Hepe01g1307 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 306 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe01g1307 1251 FunFam Putative ABC transporter B family member 8 645 992 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1307 K05658 - - csv:101213474 2216.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1307 Hepe-Chr1:78271018 Hepe10g1567 Hepe-Chr10:52371700 0.0 dispersed
Hepe01g1307 Hepe-Chr1:78271018 Hepe08g2014 Hepe-Chr8:56421091 2.42e-302 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g448 . Blo03g01437 . . . . . . . . . Cma09g00928 . . . . . Bhi09g01941 . . . Hepe01g1307 Mch11g1155 . . . . . . . . . Cone9ag0100 . . . . Chy04g00994 . . . . . . . . . . . Cmo09g00924 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136