Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1311 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATTGACGATATCCCTGTACCTGAAGCGAATTTCCCAGTCACGAGTTCAAGCTTCTCGTGGGCTGTTCAGCCCTTTAACGGCACCCCAGATGCTGGTGCGGAAATTGATGGTTCATTGGCAGATCTGGATGGCCATCTAGAATCTGGCTCAAAGAAGAGGGTCAGATCTGATTCATGTAGTGGATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGAGATAGGCTCAATGACAAGTTTCTTGAACTGGGCTCCATTCTGGATCCTGGAAGACCACCCAAAACCGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGTGAATCAGTTGCGTAGCGAAGCCCAGAAACTGAAGGAATCAAATTCAGGTCTCCAGGAGAAGATCAAAGAGTTGAAGACCGAGAAGAATGAGCTTCGCGACGAGAAGCAGAGGCTGAAGGCAGATAAGGAGAAGCTAGAGCAGCAAGTGAAGTCCATGCATGCTCAACCAGCTGGCTTCTTACCTCCACCAATGCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGAAATAAGTTAGTTCCTTTCATTGGTTACCATCCGGGAGTTGCCATGTGGCAGTTCATGCCGCCTGCTGCGGTGGACACGTCACAGGACCATGTGCTCCGGCCACCCGTCGCTTAA 708 49.44 MVSPENPNWLFDYGLIDDIPVPEANFPVTSSSFSWAVQPFNGTPDAGAEIDGSLADLDGHLESGSKKRVRSDSCSGSSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSEAQKLKESNSGLQEKIKELKTEKNELRDEKQRLKADKEKLEQQVKSMHAQPAGFLPPPMPTFAAQGQAPGNKLVPFIGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78330567 78333251 - Hsped.01g13110.1 Hepe01g1311 560421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1311 235 FunFam Transcription factor bHLH34 66 124 - -
Hepe01g1311 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Hepe01g1311 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Hepe01g1311 235 CDD bHLH_AtILR3_like 80 155 - -
Hepe01g1311 235 PANTHER BHLH TRANSCRIPTION FACTOR 8 235 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Hepe01g1311 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 152 IPR036638 GO:0046983(InterPro)
Hepe01g1311 235 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Hepe01g1311 235 Coils Coil 116 178 - -
Hepe01g1311 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Hepe01g1311 235 Gene3D - 66 124 IPR036638 GO:0046983(InterPro)
Hepe01g1311 235 MobiDBLite consensus disorder prediction 163 194 - -
Hepe01g1311 235 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1311 Hepe-Chr1:78330567 Hepe04g1592 Hepe-Chr4:71405335 2.65e-11 dispersed
Hepe05g1646 Hepe-Chr5:66308257 Hepe01g1311 Hepe-Chr1:78330567 3.14e-37 transposed
Hepe07g1156 Hepe-Chr7:25726839 Hepe01g1311 Hepe-Chr1:78330567 6.09e-88 transposed
Hepe08g1394 Hepe-Chr8:16413391 Hepe01g1311 Hepe-Chr1:78330567 5.06e-41 transposed
Hepe01g1311 Hepe-Chr1:78330567 Hepe07g1992 Hepe-Chr7:63950339 1.79e-62 wgd
Hepe01g1311 Hepe-Chr1:78330567 Hepe08g0487 Hepe-Chr8:4274991 1.26e-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54820 PF00010 HLH 1.10E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1311 - - - 0.0