Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1334 ATGGAGCTTACATCTTCTCAAAACCTCAGTAATGGCAACACCTTGATCTCAGAAAAAGGAATTTTCGAGCTGGGTTTCTTCAGTCCTGGGAATTCCAAGAGTCGTTACTTGGGAATTTGGTTCAAAATCATCCCAATTCCCACTGTTGTCTGGGTCGCCAACAGAGAAAATCCGCTCAAAGATCTTCTTGGTATTTTGAGAATAAACACCACAGTCAATAAAATCATTCTCATCCAGAATGATGATACCGTTGTTTGGTCAGCAAAGTCGTTAAAACCATTGGAAAATCCCAGGCTACAGCTCTTGGACACTGGAAATTTAGTACTGAAAGATGGGAACTCGGAGGAATTTTTGTGGGAAAGCTTCGATTATCCAACTGACACATTGTTGCCAGGAATGAAGCTGGGATGGGATTTTAGAAATGGCATAAACAGACGATTATCAGCTTGGAAAAACTGGGACGACCCATCTTCTGGAACCTTGACCATGGAAATGGAGAATCATATCTACCCAGAACCCGCCATGTGGAATGGTACTCAAGAGTTCATGAGAACTGGACCTTGGAATGGGATTCGATACAGTGCCAAGCCTGTTTCTGCTTTCCCAATTTTAGTCTTCCACTACGCGAATAATAAAGATGAGCTTTATTACAGCTACCACCTCATTAACAAATCTCTGATTGGAAGAATGGTGTTGAACCAATCCAGTTTCAAGAGAGAAGCTTTGTTGTGGTCAGAAGCTGAGAAAAATTGGAAGGTATACGCCTCGATACCGCGGGATTTCTGTGATGTATACAACTTTTGTGGTGCTTTTGGGAGCTGCAACATTGAGAATATGCCTGCTTGTCAATGTCTGAAAGGGTTCCGGCCAAGGGTGCCGGAGAAATGGATCAGTCTCATGGATTATACAGAAGGGTGTGTTAGAAATAAGCCTCTTAATTGCTCGGATGAATTCGGGTTTGCTAAGTTTCCGGGGATGAAATTGCCTGACACTAAATTGTCTTGGGTTAATGAAAGCTTGAGTTTAAGTGAATGCAGGGAAAAGTGCTTGAAAAATTGTTCTTGTTTGGCGTTTGCCAATACAGATATAAGAGGATCAGGTAGTGGTTGTGCCATTTGGCTTGATAATCTTGTTGATATATCAATGATCCTAAAAGGTGGACAAGACTTGTATGTTCGAATACTCGCTTCTGAATTGGAGACAAAGCAAACGAGTTCGGTGGTCATTGGCGTTGTAATTTCAGCTGCAGTCCTTATATTTGCGGTCCTACTTTTGGTTGGATTTTACATTATTAGAAGCAGGAAAAGCCTTGGAGGTAAGGAACTTGAAGAGCAAGAGGAAGACTGGGAGCTCCCATTATTTGACTTATCAACAGTATCAAATGCCACAGACAATTTTTCAAAATCTAACAAGCTTGGAGAAGGCGGTTTCGGTGCAGTCTTCCGGGGTAGACTTGAAAATGGACAGGAGATTGCTGTGAAGAGGCTTTCCAGCCATTCAAGACAAGGAAATGATGAATTCAAGAATGAAGTTATACTTATAGCCAAACTTCAGCATCGAAATCTTGTAAAACTTCTGGGTTGCTGTATCCAAGAGGAAGAAAAATTGTTGATTTACGAATACATGCCTAATAAGAGCTTGGACGACTTCATATTTGATCCTGAAAGGAGGAAACTCTTAGATTGGCCAAAACGATTCAACATCATATGCGGAATAGCCAGAGGGATTCTTTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATCTTAAACCAAGCAATGTTTTGCTGGATATTGATATGAACCCAAAAATCTCAGATTTTGGAATGGCTAGAACTTTTGGTGGAGATCAAATTGAAGGAAATACTAGGAGAGTTGCTGGAACATATGGATATATGGCGCCAGAATATGCCATTCGTGGACAATTTTCAATAAAGTCTGATGTATTTAGTTTCGGCATTTTATTGTTGGAGATTATAAGTGGAAAGAGAAATAGAGGATTTTATCGGTCGAATCTTGCTCTCAACCTTATTGGACATGCATGGAAATTATGGAAGGAAGGAAGAGCATCTGAATTCATGGACACATCCATCAAAGACACTTATGCTGTGTCTAAAGTACTACGATATATCCATGTTAGCCTTTTGTGCTTGCAACAACATCCTAACGACAGACCAAATATGTCGAATGTGATTTTGATGCTAGATAGTGAGAGTGTCTTGGTGCAACCGAAACAACCAGGATTCTACATGGATAAAGACTCGCTTGAAGTTGATTCTCTTTTAAGCAAGAATGAGTTTTCAACTACCAACGAATTAACTATTACTCTGTTTGAAGCTAGATAA 2352 40.09 MELTSSQNLSNGNTLISEKGIFELGFFSPGNSKSRYLGIWFKIIPIPTVVWVANRENPLKDLLGILRINTTVNKIILIQNDDTVVWSAKSLKPLENPRLQLLDTGNLVLKDGNSEEFLWESFDYPTDTLLPGMKLGWDFRNGINRRLSAWKNWDDPSSGTLTMEMENHIYPEPAMWNGTQEFMRTGPWNGIRYSAKPVSAFPILVFHYANNKDELYYSYHLINKSLIGRMVLNQSSFKREALLWSEAEKNWKVYASIPRDFCDVYNFCGAFGSCNIENMPACQCLKGFRPRVPEKWISLMDYTEGCVRNKPLNCSDEFGFAKFPGMKLPDTKLSWVNESLSLSECREKCLKNCSCLAFANTDIRGSGSGCAIWLDNLVDISMILKGGQDLYVRILASELETKQTSSVVIGVVISAAVLIFAVLLLVGFYIIRSRKSLGGKELEEQEEDWELPLFDLSTVSNATDNFSKSNKLGEGGFGAVFRGRLENGQEIAVKRLSSHSRQGNDEFKNEVILIAKLQHRNLVKLLGCCIQEEEKLLIYEYMPNKSLDDFIFDPERRKLLDWPKRFNIICGIARGILYLHQDSRLRIIHRDLKPSNVLLDIDMNPKISDFGMARTFGGDQIEGNTRRVAGTYGYMAPEYAIRGQFSIKSDVFSFGILLLEIISGKRNRGFYRSNLALNLIGHAWKLWKEGRASEFMDTSIKDTYAVSKVLRYIHVSLLCLQQHPNDRPNMSNVILMLDSESVLVQPKQPGFYMDKDSLEVDSLLSKNEFSTTNELTITLFEAR 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78518100 78529943 - Hsped.01g13340.1 Hepe01g1334 560444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1334 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 542 745 - -
Hepe01g1334 783 ProSiteProfiles PAN/Apple domain profile. 314 395 IPR003609 -
Hepe01g1334 783 PIRSF SRK 1 783 IPR024171 GO:0004674(InterPro)
Hepe01g1334 783 Gene3D Phosphorylase Kinase; domain 1 440 541 - -
Hepe01g1334 783 SMART serkin_6 466 737 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1334 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 49 156 IPR036426 -
Hepe01g1334 783 Pfam D-mannose binding lectin 48 151 IPR001480 -
Hepe01g1334 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 432 541 - -
Hepe01g1334 783 Gene3D - 1 122 IPR036426 -
Hepe01g1334 783 SUPERFAMILY Protein kinase-like (PK-like) 448 746 IPR011009 -
Hepe01g1334 783 SMART blect_4 6 125 IPR001480 -
Hepe01g1334 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 122 - -
Hepe01g1334 783 ProSiteProfiles Bulb-type lectin domain profile. 1 122 IPR001480 -
Hepe01g1334 783 Pfam PAN-like domain 314 380 IPR003609 -
Hepe01g1334 783 CDD PAN_AP_plant 311 394 - -
Hepe01g1334 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1334 783 SMART ntp_6 315 394 IPR003609 -
Hepe01g1334 783 ProSiteProfiles Protein kinase domain profile. 466 743 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1334 783 Pfam Protein tyrosine and serine/threonine kinase 469 734 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1334 783 Pfam S-locus glycoprotein domain 184 291 IPR000858 GO:0048544(InterPro)
Hepe01g1334 783 ProSitePatterns Protein kinases ATP-binding region signature. 472 494 IPR017441 GO:0005524(InterPro)
Hepe01g1334 783 CDD B_lectin 9 125 IPR001480 -
Hepe01g1334 783 CDD STKc_IRAK 472 738 - -
Hepe01g1334 783 Gene3D Hepatocyte Growth Factor 311 395 - -
Hepe01g1334 783 Pfam Domain of unknown function (DUF3403) 740 783 IPR021820 GO:0004674(InterPro)
Hepe01g1334 783 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 751 - -
Hepe01g1334 783 Gene3D Transferase(Phosphotransferase) domain 1 542 748 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1334 Hepe-Chr1:78518100 Hepe01g1338 Hepe-Chr1:78542356 0.0 dispersed
Hepe01g1334 Hepe-Chr1:78518100 Hepe01g1335 Hepe-Chr1:78530222 0.0 tandem
Hepe01g1334 Hepe-Chr1:78518100 Hepe02g0179 Hepe-Chr2:1875878 4.86e-152 wgd
Hepe01g1334 Hepe-Chr1:78518100 Hepe04g1802 Hepe-Chr4:72967135 2.16e-109 wgd
Hepe01g1334 Hepe-Chr1:78518100 Hepe07g1971 Hepe-Chr7:63673465 3.77e-208 wgd
Hepe01g1334 Hepe-Chr1:78518100 Hepe08g0498 Hepe-Chr8:4359002 8.11e-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72462 PF07714 PK_Tyr_Ser-Thr 3.20E-47 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1334 - - - 0.0