Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1350 ATGGCAGCCTCTGCAAGCTCCAACACTCTTCTCAGACCAACCCCATTTCTTGGTCAAAGCAGAGGATCAAACTCCAATGCCATTAGAGATGTTCTCCCAATGGGGACTGCAAAATACACCATGAGCAATGAATTATGGTATGGACCAGACAGAGTCAAGTACTTGGGGCCATTTTCAGCTCAGACACCTTCATATTTGACAGGAGAATTTCCAGGTGATTATGGATGGGACACTGCTGGACTCTCTGCTGATCCAGAGGCATTTGCCAAGAACAGAGCTCTCGAGGTAATCCACGGGAGATGGGCAATGCTGGGAGCTTTAGGCTGCATAACCCCAGAAGTGCTGGAGAAATGGGTGAACGTAGATTTCAAGGAACCCGTGTGGTTCAAAGCTGGATCTCAAATCTTCTCAGAAGGAGGATTGGACTACTTGGGCAATCCCAATCTGGTCCACGCACAGAGTATTTTGGCGGTGTTGGGTTTCCAAGTGGTTTTGATGGGTTTGGTCGAGGGGTTCCGAATCAATGGCCTGCAAGGAGTTGGAGAAGGAAACGAGCTGTACCCAGGAGGGCAATATTTCGACCCATTAGGGCTGGCGGATGATCCAGTAACATTTGCAGAGCTGAAGGTGAAAGAGGTCAAAAATGGCAGATTGGCAATGTTTTCGATGTTTGGTTTCTTTGTGCAGGCCATTGTGACAGGGAAAGGGCCGCTTGAGAACCTTTTGGACCATCTTGATAACCCAGTTGCTAATAATGCTTGGGTTTATGCTACTAAGTTTGCGCCTGGATCTTGA 795 48.05 MAASASSNTLLRPTPFLGQSRGSNSNAIRDVLPMGTAKYTMSNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVNVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLQGVGEGNELYPGGQYFDPLGLADDPVTFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78679114 78680562 + Hsped.01g13500.1 Hepe01g1350 560460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1350 264 FunFam Chlorophyll a-b binding protein, chloroplastic 53 257 - -
Hepe01g1350 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 34 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Hepe01g1350 264 MobiDBLite consensus disorder prediction 1 22 - -
Hepe01g1350 264 Pfam Chlorophyll A-B binding protein 63 231 IPR022796 -
Hepe01g1350 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Hepe01g1350 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1350 Hepe-Chr1:78679114 Hepe07g1095 Hepe-Chr7:18324693 1.75e-184 dispersed
Hepe01g1350 Hepe-Chr1:78679114 Hepe09g0112 Hepe-Chr9:895168 8.55e-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1350 K08914 - vvi:100260599 516.924