Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1358 ATGATGGATAGCGGCACCCCTGGTTTAGTTTTGAAGCGTTCCTTGCGGAAGAAAGCGACCTCGCGAAATTATGACGAGGATTTAATGGACGAGCATATAGAGAAGCATTTAGGTGGTGTTTCGAAGAAGAAGAAGAGCAAAACGGCAGAGGATCTTGAGAAAGAGACTGAAATTGAGGCTATGATAGCATTATCTGTTGGATTTCCGATTGATGCTCTGCTTGAGGAGGAAATTAAAGCTAAGGTGGTGAAAAAATTGGGTGGGAAAGAGCAGAATGATTACATTGTTGTTAGGAATCATATCCTTGCACGGTGGCGGGGTAACGTCCGAATGTGGCTTTCGAAAGGGCAGATTAAAGAAACCGTGAGCAGTGAGTATGTTCATTTGATTAGTGCAGCATATGATTTCCTTCTGTACAGTGGATATATAAACTTTGGGGTGTCACCAACCTTTACATCTCCAGTGTCAGAGGAAGGATCTGAAGGATCCGAAGGATCTGTGATTATTATCGGTGCAGGCCTTGCCGGATTAGCTGCAGCTAGGCAGCTATTATCATTTGGTTTTAGGGTTATTGTTTTAGAAGGTAGGAATCGACCTGGTGGAAGAGTTTATACGCAAAAGATGGGGCAGGAGGGCAAATTTGCTGCTGTTGATCTTGGTGGCAGTGTCATTACTGGTATCCATGCTAATCCTCTCGGAGTTCTAGCTAGACAACTTTCCATTCCACTTCATAAGGTTAGAGATAATTGTCCATTGTATAAACCTGATGGGACGCTGATCGGAAAAGATATCGATGCCAAGATTGAGTTTATTTTTAATAAATTGCTAGACAAAGTGACTGAAGTGAGAAAGATTATGGGAGGATTGGCTAATAACATTTCTCTTGGAACGGTTCTAGAAAAACTCAAGCAATTGTATGCTGTGGCTCGGTGTAAGGATGAAAGACAACTTCTTGATTGGCATATAGCAAACTTGGAATACGCAAATGCAGGATGTGTTTCAAATTTGTCTGCTGTGCATTGGGATCAAGACGATCCTTATGAAATGGGCGGGGACCATTGCTTCCTAGCAGGAGGTAATGGGAGATTAATAAAAGCATTATGTGAAGGAGTTCCCATATTTTATGGGCAGGTTGTTGACACTATTAAATATGGAAATGAAGGAGTAGAAGTAATAGCTGGAAATCAAGTGTTTCAAGCTGATATGGTCCTGTGCACGGTTCCACTTGGCGTTCTGAAGCGAAAGCATATCAGATTTGAGCCAGAGTTGCCTAAAAGGAAGCTGGCAGCAATTGAGAGACTGGGTTTTGGATTATTGAATAAAGTAGCTATGGTTTTTCCTCATGTTTTCTGGGGGGAAGACCTAGATACATTTGGATGTCTTAGAGAGCATTGCCATCAGCGGGGGGAGTTCTTTTTGTTTTACGCGTATCATACTGTTTCTGGAGGTGCAGTTCTTATAGCTCTAGTTGCTGGAGAAGCTGCTGAAGCGTTTGAATGCACGGATCCAACCATGTTGCTCCACCGGGTTCTCGGAATTCTCAGAGGCATATTCAGCCCCAAGGGGATTGACGTGCCTAATCCAATACAGACAATATGCACAAGATGGGGCAGCGATCCATTTTCATATGGCTCATACTCTCATGTTCGAGTCGGATCCACTGGCAGCGACTATGATATTCTTGCAGAGAGTGTGTGGAACAGATTATTCTTTGCCGGTGAGGCCACAACTAAGCAATATCCAGCCACCATGCATGGTGCCTTCTTGAGTGGCATAAGAGAAGCTTCATATATTTTCCAAGCAACTAGGGGACGACCAAACAATTCGAGGAAGTACATGCCGAGGAATCTCAGACATGATATTCTGGTGGATCTTTTCAGGAAACCTGACATTGAATTTGGAAATATGTCCTTTATTTTTGATTCCTTGGTAGATGATGAAAAATCAATGGGGATCATGAAAATCACATTCAGGGGCAAGGCAGAAAGTTCTAACGAGGAAGAATTGGCAGACGATTGTGAAGATCCCTCACAACAACAGCTGCTGCTTTACACAATTTTATCCCGCGAACAGGCACGTGAGCTGCAACTCGCGGTTGAAGAGGATGAAAGTAGAGTGCCATATCTAGTGAAAGATTTTGGCTTAAAGCTGATGGGACCCAGTGCCTTGGCTAATACCGGTAACTCATTGATTGCTAGTATTGCCGGTGCTCGAAGAGGCCGGGGCAGGAATCGGTTGTCTACTGGACAACCACAAATGCAAATGCAAATTCCACCGCAACTGCAACCCCAACCTCAGCCCCAACTGCAACCCCAACCTCAGCCCCAACTGCAACCAGAACTGCAATCCCAGCCCCACCATGTTGAACTGCAACCCCAACCCGAACCGCAAATGCAACTGCAGCCCCAGTTCCAACTGCAACCTGAGCCCCAGCCCCAACTACAACCGCAACTGCCACCGCCCCCACAACCACAAATCTAA 2481 44.82 MMDSGTPGLVLKRSLRKKATSRNYDEDLMDEHIEKHLGGVSKKKKSKTAEDLEKETEIEAMIALSVGFPIDALLEEEIKAKVVKKLGGKEQNDYIVVRNHILARWRGNVRMWLSKGQIKETVSSEYVHLISAAYDFLLYSGYINFGVSPTFTSPVSEEGSEGSEGSVIIIGAGLAGLAAARQLLSFGFRVIVLEGRNRPGGRVYTQKMGQEGKFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGTLIGKDIDAKIEFIFNKLLDKVTEVRKIMGGLANNISLGTVLEKLKQLYAVARCKDERQLLDWHIANLEYANAGCVSNLSAVHWDQDDPYEMGGDHCFLAGGNGRLIKALCEGVPIFYGQVVDTIKYGNEGVEVIAGNQVFQADMVLCTVPLGVLKRKHIRFEPELPKRKLAAIERLGFGLLNKVAMVFPHVFWGEDLDTFGCLREHCHQRGEFFLFYAYHTVSGGAVLIALVAGEAAEAFECTDPTMLLHRVLGILRGIFSPKGIDVPNPIQTICTRWGSDPFSYGSYSHVRVGSTGSDYDILAESVWNRLFFAGEATTKQYPATMHGAFLSGIREASYIFQATRGRPNNSRKYMPRNLRHDILVDLFRKPDIEFGNMSFIFDSLVDDEKSMGIMKITFRGKAESSNEEELADDCEDPSQQQLLLYTILSREQARELQLAVEEDESRVPYLVKDFGLKLMGPSALANTGNSLIASIAGARRGRGRNRLSTGQPQMQMQIPPQLQPQPQPQLQPQPQPQLQPELQSQPHHVELQPQPEPQMQLQPQFQLQPEPQPQLQPQLPPPPQPQI 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78758184 78761782 - Hsped.01g13580.1 Hepe01g1358 560468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1358 826 Pfam SWIRM domain 75 145 IPR007526 GO:0005515(InterPro)
Hepe01g1358 826 Gene3D - 249 554 - -
Hepe01g1358 826 ProSiteProfiles SWIRM domain profile. 53 154 IPR007526 GO:0005515(InterPro)
Hepe01g1358 826 PANTHER FLAVIN MONOAMINE OXIDASE 67 600 IPR050281 GO:0016491(PANTHER)
Hepe01g1358 826 MobiDBLite consensus disorder prediction 775 811 - -
Hepe01g1358 826 MobiDBLite consensus disorder prediction 758 774 - -
Hepe01g1358 826 FunFam Lysine-specific histone demethylase 1A 58 157 - -
Hepe01g1358 826 Gene3D - 167 596 IPR036188 -
Hepe01g1358 826 SUPERFAMILY FAD/NAD(P)-binding domain 166 601 IPR036188 -
Hepe01g1358 826 SUPERFAMILY Homeodomain-like 55 154 IPR009057 -
Hepe01g1358 826 Gene3D - 59 157 IPR036388 -
Hepe01g1358 826 Pfam Flavin containing amine oxidoreductase 174 598 IPR002937 GO:0016491(InterPro)
Hepe01g1358 826 MobiDBLite consensus disorder prediction 736 826 - -
Hepe01g1358 826 SUPERFAMILY FAD-linked reductases, C-terminal domain 435 548 - -
Hepe01g1358 826 MobiDBLite consensus disorder prediction 812 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1358 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1358 Hepe-Chr1:78758184 Hepe02g2934 Hepe-Chr2:78522394 6.40e-245 dispersed
Hepe01g1358 Hepe-Chr1:78758184 Hepe01g1527 Hepe-Chr1:80495845 1.13e-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54825 PF01593 Amino_oxidase 2.80E-90 CL0063 Hepe TR