Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1370 ATGATGAACAAATCCGTGGACGAAGACGACGAAGAAGAGTGTTTCTACGAGTCCCTTGATCGCATTGCCTCCTCATGTTCCTGTTCCACTTCTAATTCCGATGAAGATAGAGATTCCAGTGCCAACTCCCCTAATTATGATTATTCCGACCACCCTTTTCCGATTCCCAAATTCCCAATGGCGGTCTCCAACTATGATATTTGGATCTCCGAGCCGGCCTCTGTGTTTGAGCGCCGTAGTCGTCTTCTTCGAGAAATGGGTCTTAGCGGCGACCCTTCTCTTTCTCGGGCTAATACGGCGCTGGAATTGGATCGTAGAGAAAAGGGTGTTGGCGATTTTGGACGATCGGTGTCGTCGGATTATTTGAGTCGTCAAGAACTGCAGCCCCCTGTCATCATCCGCTCGAAATCGGATGGTTCTGCTGATTGTAACAGGAACAAGAGCTCTTCACAGGGTTCCGGCAGTGATGCTGATAATCAGTGTAATTATTCGTCGTCCATTAATTCTCCTTCAATTCTTTCATTTCATTCGGTCAATGAGACCGCCACTTCTTCATTTGCAAATAACCGTAATCGTGTAGTTGTTAAGTCCCGAAGCTGTAAGAGTGAGGGAGCTCCATCGGTTGCTTTTATTACTTCACAGCATAAGCCGCCTTCTGGGAAAAATTGTAGATTGGCGGATGAGATTCGAAGCGATTCGTTGGTTTTGAATGCCAATTCTGATGCTAATCCATCGTCAATGTCCCAGAATGGTGAGATTAGACGAGAGGTTAGTGAGGATTTGGGTTGTTCTACTAGTGGAAAGGTCGATGACAAAGTCTGCACTATCAAAGATCTTGACAATGGTAAAGAGTTTGTTGTGAATGGGGTTAGTGAAAATGGTATGTGGAACAAGCTCAAGGAAGTGGGCACTGGGAGACAGTTGACCATGGAGGAGTTTGAAATGTGTGTTGGTCATTCACCCATTGTTCAAGAACTGATGCGGCGGCAGAATGTGGAGGATGGTTGTAACGAAAATGTCAATATAAATGTGAATGGGGATATCGGTAGCAGTTCGAAATTGAAAAAGAAAGGAGGTTGGTTTAAGAGTATAAAGAGTGCTGCGAGCACGGTGAGGGGTCAAAAGGAGAGACGTAGCAGTGATGAGAGGGATACTTCATCGGAGAAGGGTGGAAGGAGGTCGAGCTCGGCAACAGATGATAGCCAAGATGTTTCTTTTCATGGACCAGAGAGAGTAAGAGTTCGGCAGTATGGAAAATCAAGTAAAGAATTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGTGCGGGAGAGGACCGTATCATTCATGTTTGGCAGGTCGTTAAGTCGGAGAAGAAGGGCGATCTACTGATGGAGAAACCAGAAGAAGGGAATTTGAGTTTCTTATTTGCAGCTAATGAGTCACCAGAGCCCACTTCATTATCTCCAAATGTGGATAGCCATCATGAGAAGAAGAGAAGAGGGAGATCTTCTATTAGTCGGAAATCAGTGAGCTTGGAACATGTTATAGTGCCAGACACTGTATTCGGGCTTTCAGAAAAACCCATCTGTTCATTCGAGGGGCATCTTGATGTTGTGCTTGACCTTTCTTGGTCCAAATCTCAGCATTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTCTGGCATTTGTCAAGCAAATCCTGTTTGAAAATTTTTTCGCACAGTGATTATGTAACTTGCATCCAGTTTCATCCTATTGACGATAGATACTTCATTAGTGGATCGTTAGATGCTAAAGTTCGTATATGGAGTATCCCAGATCGTCAAGTCGTTGATTGGAGCGACTTGAATGAGATGGTGACCGCTGCTTGCTATACACCTGATGGCAAGGGTGCATTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAATACTTCTGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAGAACAAGAAGAAAAAGTCTAGTCACAAGAAAATAACTGGGTTCCAGTTTGCTCCAGGAAGTTCAACAGAAGTGCTCATTACATCTGCAGATTCACGTATCCGACTGGTCGATGGTGTTGATCTGGTCCAGAGGTTTAAAGGGTTCCGAAATACGAACAGCCAAATCTCTGCCTGCCTTTCGGCGAATGGCAGGTATGTGATTTCGGCCAGTGAGGATTCTCATGTGTACGTATGGAAGCATGAAGCTGATTCTCGACCTAGTAGGAGCAAAGGAGTGACAGTTGTCCGATCATACGAGCATTTCCACTGTCAGGATGTCTCTGTGGCTATTCCTTGGCCTGGGATGGGCGACACATGGGGACTTCACGACGATTATTGTGGAGATGACAATGTGTTTGACAATCATCTCGATGAAGTCTCCTTCGCTAACCATCCCCCTTCACCTGTGGAGGCAACAAACGGTAGCGAGGATTCACAATCAGCATCTGGTTGCACAAACAGCCCTCTTCACGGAACTCTTACAAGTGCAACCAACAGCTACTTCTTTGACAGAATCTCAGCAACGTGGCCAGAGGAAAAACTCGTTCTAAATACTCGGCACAACCGTAGTCCTCATTCCAGTATGGACATTGCCAGCGGAATGTTTCAAGGCACTTCGGCATGGGGTATGGTGATCGTAACTGCTGGTCTTCGAGGCGAAATCAGAACTTTCCAAAATTTTGGATTTCCAGTTAAGATTTAA 2763 45.35 MMNKSVDEDDEEECFYESLDRIASSCSCSTSNSDEDRDSSANSPNYDYSDHPFPIPKFPMAVSNYDIWISEPASVFERRSRLLREMGLSGDPSLSRANTALELDRREKGVGDFGRSVSSDYLSRQELQPPVIIRSKSDGSADCNRNKSSSQGSGSDADNQCNYSSSINSPSILSFHSVNETATSSFANNRNRVVVKSRSCKSEGAPSVAFITSQHKPPSGKNCRLADEIRSDSLVLNANSDANPSSMSQNGEIRREVSEDLGCSTSGKVDDKVCTIKDLDNGKEFVVNGVSENGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNENVNINVNGDIGSSSKLKKKGGWFKSIKSAASTVRGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVKSEKKGDLLMEKPEEGNLSFLFAANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFEGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFHPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLNEMVTAACYTPDGKGALVGSYKGSCRLYNTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSTEVLITSADSRIRLVDGVDLVQRFKGFRNTNSQISACLSANGRYVISASEDSHVYVWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGMGDTWGLHDDYCGDDNVFDNHLDEVSFANHPPSPVEATNGSEDSQSASGCTNSPLHGTLTSATNSYFFDRISATWPEEKLVLNTRHNRSPHSSMDIASGMFQGTSAWGMVIVTAGLRGEIRTFQNFGFPVKI 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78935406 78943610 + Hsped.01g13700.1 Hepe01g1370 560480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1370 920 MobiDBLite consensus disorder prediction 371 396 - -
Hepe01g1370 920 MobiDBLite consensus disorder prediction 142 162 - -
Hepe01g1370 920 MobiDBLite consensus disorder prediction 24 48 - -
Hepe01g1370 920 MobiDBLite consensus disorder prediction 820 842 - -
Hepe01g1370 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 433 466 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 579 - -
Hepe01g1370 920 MobiDBLite consensus disorder prediction 367 417 - -
Hepe01g1370 920 SUPERFAMILY WD40 repeat-like 429 756 IPR036322 GO:0005515(InterPro)
Hepe01g1370 920 PRINTS G protein beta WD-40 repeat signature 605 619 IPR020472 -
Hepe01g1370 920 PRINTS G protein beta WD-40 repeat signature 452 466 IPR020472 -
Hepe01g1370 920 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Hepe01g1370 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 585 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 MobiDBLite consensus disorder prediction 24 47 - -
Hepe01g1370 920 MobiDBLite consensus disorder prediction 494 519 - -
Hepe01g1370 920 PANTHER WD REPEAT DOMAIN 44 13 920 IPR040324 -
Hepe01g1370 920 SMART WD40_4 426 465 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 SMART WD40_4 620 659 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 SMART WD40_4 672 711 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 SMART WD40_4 538 576 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 SMART WD40_4 579 618 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 SMART WD40_4 712 753 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 MobiDBLite consensus disorder prediction 816 842 - -
Hepe01g1370 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 433 466 - -
Hepe01g1370 920 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 619 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 MobiDBLite consensus disorder prediction 128 162 - -
Hepe01g1370 920 Pfam WD domain, G-beta repeat 431 464 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 Pfam WD domain, G-beta repeat 581 618 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 Pfam WD domain, G-beta repeat 540 575 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 Pfam WD domain, G-beta repeat 726 752 IPR001680 GO:0005515(InterPro)
Hepe01g1370 920 FunFam WD repeat-containing protein 44 526 792 - -
Hepe01g1370 920 Gene3D - 417 781 IPR015943 GO:0005515(InterPro)
Hepe01g1370 920 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1370 K20241 - - csv:101208316 1662.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1370 Hepe-Chr1:78935406 Hepe06g1451 Hepe-Chr6:65105320 2.58e-112 dispersed
Hepe01g1370 Hepe-Chr1:78935406 Hepe04g0857 Hepe-Chr4:62839690 4.90e-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34