Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1386 ATGTGTGTATATTTGCTTATATGCGGTTTTAAGTGGATAACAATGGAGGCATCATCTGATCACCTTAAGAACCAGGATGATTTATCTGGGGTTTGTGAGGAAGATATACTAGCTGACCCTTATGTGCGTTCTTTTAAATGGAGTGATGTTAGCTTGAGGCAATGGTTGGATAAGCCAGAAAGATCCGTGGATGCTCTTGAGTGTCTTCATATATTTAGGCAAATAGTGGAGATTGTTAACATTGCCCATGCTCAAGGCATTGTTGTTCACAATGTGCGTCCTTCATGCTTTGTGATGTCCTCTTTCAACCATGTAACCTTTATTGAGTCGGCATCGTGTTCAGATTCTGGCTCTGATTCTCTCGAGGATGGCCTTAATAGTCAAACTGCAGAGGTTAAAAAATCATTTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTTCGATCCGTTATGACCCCTATAAACGCTTTGTCGGAAACTAGTTGCATGCAGTCAAGTTCAGTATATGCAGCCCGAATATCCTTAAATGAAGGGTCTGGAGAATGTAGAAAAAAAGATAGAAGACATATTGAAGAAGCAGAAGATAAGATGCAATCATTTCCAATGAAACAGATATTGGTCATGGAGACTACTTGGTACACTAGCCCAGAAGAGGCTTCTGGTGGCCCAAGTTCTAGTGCTTCAGATATCTACCGGTTAGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAAAGTAGAACTATGTCGAGCTTGAGGCATAGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTGCATCCTGAGCCAAGTAATCGACCTAAGCTAAGTGATATATTGCTGAGTGAATTTCTCAATGAACCAAGGGATGACCTAGAAGAGCGTGAAGCAGCAATCGACCTTAGAAAAAGAATTGAAGAGCAGGAGTTGCTGCTAGAATTCCTTTTGCTTATGCAACAAAGAAAGCAGGAAGCTGCTCATAAGTTGCAAGATACTATTTCATTTCTGTGCAGTGATATTGAACAAGTTACGAGGCACCAAACTAGTTTGAAGAAAAAGAGTAGGTCATGCCCAGATCTAGAGAAGGACAATCATTTGCCATCAAATCTCCCTTCAATGACTCCTGTTGGAAATACTGATTCTGCTGGCTCGGGATCAAGGAAACGATTTAGGCCTGGAAATTTGGCCCATGATATAGAAGCATGCGGTGATAATCTTGATGACTGTGAGAAGTCAAGTTCAGCCAATGAAAATGAACAAGGTGTACTTTTTAAGAGTTCTCGATTAATGAAGAACTTCAAGAAATTGGAGTTAGCATATTTTATGATGAGAGGTAGAGTAAACAAGCCATCAGGGAGGCAGTTTGTTAAACACTCATCAATAAGTAGCGATGGTAGAGGGTCTGTAGTTTTGACTGAAAGAAGTTCAGCTAATAATTTGGCTTCAAAAGAGAGTTGCAATGACAATAGACAAGGCGGGTGGATAAGTCCGTTCCTGGAGGGTTTGTGCAAGTATCTATCCTTTAGCAAGTTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACCTAGTATGTTCTCTCAGTTTTGACCGTGATGGAGAATTTTTTGCCACGGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCAATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTCTGTTGGAATCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTATGGGATGTCACAAGAAGTCAAGTAGTCACTGAAATGGGAGAACATGAGAGGCGTGTATGGTCCATTGACTTCTCATCCGCGGATCCAACAATTTTGGCTAGCGGGAGTGATGATGGTTCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGCACAATCAGAACAAAAGCCAATGTCTGCTGTGTACAATTTCCTGTAGATTCTGGTCGGTCCCTTGCATTTGGCTCAGCTGATCACAAAATTTATTACTATGACATGCGGAATATAAGAGTTCCTTTGTGCACCTTCACTGGACATAACAAAACTGTGAGTTACGTCAAGTATATAGATTCAAACACTCTTGTTTCTGCATCCACCGATAACACCTTGAAGCTCTGGGATTTGTCCATGTGCACATCCCGCGTTATTGATTCTCCAGTTCAGTCCTTCACGGGCCACATGAATGTAAAGAACTTTGTGGGACTATCAGTCTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTTTTTGTCTACCACAAAGCCTTTCCAATGCCAGCATTGTCGTACAAGTTTCAAATGGATCCTCTTTCCGGTCACGAAATGGACGACGCCGCACAATTTATCTCTTCGGTTTGTTGGCGAGGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCATATCAAGATTTTGGAAATGGTTTAA 2556 41.51 MCVYLLICGFKWITMEASSDHLKNQDDLSGVCEEDILADPYVRSFKWSDVSLRQWLDKPERSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQTAEVKKSFSPFPSSLGSEGFRSVMTPINALSETSCMQSSSVYAARISLNEGSGECRKKDRRHIEEAEDKMQSFPMKQILVMETTWYTSPEEASGGPSSSASDIYRLGVLLFELFCSFSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSNRPKLSDILLSEFLNEPRDDLEEREAAIDLRKRIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVTRHQTSLKKKSRSCPDLEKDNHLPSNLPSMTPVGNTDSAGSGSRKRFRPGNLAHDIEACGDNLDDCEKSSSANENEQGVLFKSSRLMKNFKKLELAYFMMRGRVNKPSGRQFVKHSSISSDGRGSVVLTERSSANNLASKESCNDNRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHERRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTVSYVKYIDSNTLVSASTDNTLKLWDLSMCTSRVIDSPVQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPALSYKFQMDPLSGHEMDDAAQFISSVCWRGQSSSLVAANSTGHIKILEMV 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79068710 79075488 + Hsped.01g13860.1 Hepe01g1386 560496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1386 851 PRINTS G protein beta WD-40 repeat signature 607 621 IPR020472 -
Hepe01g1386 851 PRINTS G protein beta WD-40 repeat signature 650 664 IPR020472 -
Hepe01g1386 851 PRINTS G protein beta WD-40 repeat signature 734 748 IPR020472 -
Hepe01g1386 851 ProSiteProfiles Trp-Asp (WD) repeats profile. 716 749 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 667 - -
Hepe01g1386 851 Gene3D - 516 851 IPR015943 GO:0005515(InterPro)
Hepe01g1386 851 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 672 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 MobiDBLite consensus disorder prediction 364 409 - -
Hepe01g1386 851 Gene3D Transferase(Phosphotransferase) domain 1 48 310 - -
Hepe01g1386 851 MobiDBLite consensus disorder prediction 383 401 - -
Hepe01g1386 851 PANTHER PROTEIN SPA1-RELATED 2 40 851 IPR044630 GO:0009640(InterPro)
Hepe01g1386 851 MobiDBLite consensus disorder prediction 364 378 - -
Hepe01g1386 851 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 716 749 - -
Hepe01g1386 851 ProSitePatterns Trp-Asp (WD) repeats signature. 734 748 IPR019775 -
Hepe01g1386 851 SUPERFAMILY Protein kinase-like (PK-like) 49 311 IPR011009 -
Hepe01g1386 851 SMART WD40_4 666 705 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 SMART WD40_4 623 663 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 SMART WD40_4 756 795 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 SMART WD40_4 535 570 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 SMART WD40_4 810 849 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 SMART WD40_4 709 747 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 SMART WD40_4 581 620 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 513 851 - -
Hepe01g1386 851 Pfam WD domain, G-beta repeat 627 663 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 Pfam WD domain, G-beta repeat 712 747 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 Pfam WD domain, G-beta repeat 542 569 IPR001680 GO:0005515(InterPro)
Hepe01g1386 851 SUPERFAMILY WD40 repeat-like 539 848 IPR036322 GO:0005515(InterPro)
Hepe01g1386 851 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1386 K26557 - - csv:101205812 1524.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1386 Hepe-Chr1:79068710 Hepe06g1490 Hepe-Chr6:65478360 3.77e-177 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g219 . . . . . . . . . . Cma01g01208 . Car01g01033 Car09g00778 Sed04g2397 . . Bhi09g03427 Tan01g4395 Cmetu07g0812 . Hepe01g1386 . . . . . . . . . . . Cone14ag1062 Cone15ag1054 . . . . . . . . . . . . . Cmo01g01262 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45