Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1394 ATGCCGGAATCCACCATCGGCGACCCTCTGCTCCAAATTACCCATGTCGGCGCCGGATTCACTTGGTGGCAGAAGCTCTTCGACAAGGAGGAGGTCAAGAAACAACTCTCCATTTCACTTCCGATGATTCTCACTAATGTCTTCTACTACCTAATCCCCCTCATTTCCGTCATGTTCGCCGGCCATCTCGGCGACCTCGAGCTCGCCGGAGCCACTCTCGCCAACTCCTGGGCCACCGTCACCGGATTTGCTTTCATGACGGGCCTGAGCGGCGCATTGGAAACACTCTGCGGCCAAGGGTTTGGGGCCAAATTATACAGAATGTTAGGGATTCATCTGCAATCCTCCTGCATAATCTCCTTCTCCTTCTCTATTTTTGTTTCCCTTTTGTGGTTCTACACAGAGCCCGTATTGAAATTGCTGCAGCAAGATCCCGAGGTGTCGAAAACCGCCGCCCGGTATGTGAAATATCTGGTTCCTGGGCTGTTCGCTTATGGGTTTCTGCAGAACAGTGTAAGATTTCTTCAAACTCAATCGGATGTTATGTTTCTGGTTGTGCTCTCTGCAATTCCATTACTGCTTCACCTTGGTGTTGCTTATGCTTTTGTCAACTGGATGAGTTTGGGGCTGGAAGGAGCTGCTTTGGCAGCTTCCATTTCATTGTGGGTGGCTTTTTTGGCTGTGGCCATTCATATTTCTAAGTCTCACAAGTATGAGCTCACTTGGCGTGGATTCTCTGTTGAAGCATTTAGTTACATATTTGTCAACTTAAAGCTTGCTTTGCCCTCTGCTGCAATGGTTTGTTTGGAGTATTGGGCATTTGAGATTCTTGTGTTCTTGGCTGGATTGGCTCCAAATTCTAAAACAAATACATCTTTGATTGCAATTTGTGTAAACACAGAAGCCATTGCCTACATGATCACATATGGACTCAGTGCAGCTGCAAGCACAAGGGTGTCAAATGAGTTGGGGGCAGGCAATCCTGAGAGAGCAAGACAAGCCATGTTTGTCACTCTTCTACTCTCAGTCCTTCTAGGCCTTGCAGTTGTTCTTCTGCTGGCATTTGGCCATAACATTTGGGCTGGCTTCTTCAGTGATGCTCCTGTGATTATACAAGCCTTTGCCTCCATGACACCCCTTCTCACCATTTCCGTTCTTGCGGACTCCGTGCAAGGCGTATTATCAGGGGTGGCTAGAGGATGTGGTTGGCAACACATGGTTGTGTTTGTAAACTTGGCTACATTCTTTCTTGTTGGTATTTCAACAGCAGTCTTCTTGGAATTCAGAATGAAACTTTATTCCACGGGGTTGTGGATTGGTTTGATCTGTGGTCTGTTATGCCAAACTTTGACCCTTCTGATAATAATAGTTCGCTCAAAGTGGACAAGAATTGAGCTCTCTGATCATCAAGGCAAACAAAATCCAGCTCTGGCTTGA 1437 46.9 MPESTIGDPLLQITHVGAGFTWWQKLFDKEEVKKQLSISLPMILTNVFYYLIPLISVMFAGHLGDLELAGATLANSWATVTGFAFMTGLSGALETLCGQGFGAKLYRMLGIHLQSSCIISFSFSIFVSLLWFYTEPVLKLLQQDPEVSKTAARYVKYLVPGLFAYGFLQNSVRFLQTQSDVMFLVVLSAIPLLLHLGVAYAFVNWMSLGLEGAALAASISLWVAFLAVAIHISKSHKYELTWRGFSVEAFSYIFVNLKLALPSAAMVCLEYWAFEILVFLAGLAPNSKTNTSLIAICVNTEAIAYMITYGLSAAASTRVSNELGAGNPERARQAMFVTLLLSVLLGLAVVLLLAFGHNIWAGFFSDAPVIIQAFASMTPLLTISVLADSVQGVLSGVARGCGWQHMVVFVNLATFFLVGISTAVFLEFRMKLYSTGLWIGLICGLLCQTLTLLIIIVRSKWTRIELSDHQGKQNPALA 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79160551 79164319 - Hsped.01g13940.1 Hepe01g1394 560504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1394 478 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 462 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Hepe01g1394 478 CDD MATE_eukaryotic 31 463 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Hepe01g1394 478 NCBIfam MATE family efflux transporter 41 438 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Hepe01g1394 478 Pfam MatE 41 200 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Hepe01g1394 478 Pfam MatE 262 423 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1394 K03327 - - csv:101203764 782.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1394 Hepe-Chr1:79160551 Hepe07g1025 Hepe-Chr7:14585524 6.94e-204 dispersed
Hepe01g1394 Hepe-Chr1:79160551 Hepe07g1021 Hepe-Chr7:14438051 6.94e-204 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g195 . . . . . . . . . . . Cma09g00855 . Car09g00769 . . . Bhi09g03441 . . . Hepe01g1394 Mch11g1059 . Cla11g01753 Cam11g1820 Cec11g1840 Cco11g1847 Clacu11g1980 Cmu11g1790 Cre11g2197 . . . . . . . . Blo07g00952 Blo10g00756 . Bda12g00836 . . . . . . Cmo09g00848 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67