Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1396 ATGACTGGCAAAGAGATTCTCCACAAGATGAAGGAAAAAGTTGGGCTGTGTTCGTCGGATCCAGACTCTGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGTTTTCACTTGGTGGAAGGGAAATCACATCATAGCATGGAAGATTATGTGGTTGCAGAGTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAATTCAATCCCTGATTATTTACAGTCGCATTTATTTGCAAATATAATAAATGAGCCTGATTTCTGGAACGATCCAAAGAACGCAGTCAGGAAAGCATACAGGGAAACTGATGCTTACATTTTAGAGAAGGCTGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACAGCCATATTGATTGACTGTAAGAAACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCAGTTATCTCTAGGAATGGTAAGGCCGGACAATTATCAGTCGATCATGAGCCGAGCGTTGAAAGAAAATGCATTGAGGACAGAGGTGGTTTTGTAACAAACTTTCCTGGAGACGTTCCACGTGTTGATGGGCAGTTGGCAGTTGCAAGGGCGTTTGGTGATAGGAGCTTAAAGCAACACTTGAGCTCAGAGCCTGACGTGGTTGTGGAGATGATAGATGACAAGACCGAGTTTGTTATCTTGGCAAGCGATGGATTGTGGAAGGTGATGTCGAACGAAGAAGCCGTAGAGTCTATCAGGCATATAAAAGACGCTCACGCAGCTGCCAAGCACTTGACCGAGGAGGCCCTCAAGAGGAAGAGCAAAGATGATATTTCTTGTATAGTTGTGAGATTTCACTGA 852 44.13 MTGKEILHKMKEKVGLCSSDPDSGKGKSKMSKHVTHGFHLVEGKSHHSMEDYVVAEFKQVDHHELGLFAIFDGHLSNSIPDYLQSHLFANIINEPDFWNDPKNAVRKAYRETDAYILEKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVISRNGKAGQLSVDHEPSVERKCIEDRGGFVTNFPGDVPRVDGQLAVARAFGDRSLKQHLSSEPDVVVEMIDDKTEFVILASDGLWKVMSNEEAVESIRHIKDAHAAAKHLTEEALKRKSKDDISCIVVRFH 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79193775 79196617 - Hsped.01g13960.1 Hepe01g1396 560506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1396 283 ProSitePatterns Glycosyl hydrolases family 5 signature. 87 96 IPR018087 GO:0004553(InterPro)|GO:0005975(InterPro)
Hepe01g1396 283 SUPERFAMILY PP2C-like 31 283 IPR036457 -
Hepe01g1396 283 SMART PP2C_4 31 280 IPR001932 -
Hepe01g1396 283 Pfam Protein phosphatase 2C 45 275 IPR001932 -
Hepe01g1396 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Hepe01g1396 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Hepe01g1396 283 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Hepe01g1396 283 CDD PP2Cc 43 282 IPR001932 -
Hepe01g1396 283 Gene3D - 16 283 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1396 Hepe-Chr1:79193775 Hepe01g2126 Hepe-Chr1:85895053 9.75e-107 dispersed
Hepe02g2750 Hepe-Chr2:76016297 Hepe01g1396 Hepe-Chr1:79193775 3.04e-59 transposed
Hepe10g1335 Hepe-Chr10:49448469 Hepe01g1396 Hepe-Chr1:79193775 1.18e-39 transposed
Hepe01g1396 Hepe-Chr1:79193775 Hepe02g0124 Hepe-Chr2:1422576 1.81e-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1396 K17506 - csv:101215129 512.301