Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1400 ATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGCGTTTGACAAGGAGCTTAATAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACGAGACGAAGTTATGGATAATAATGGAGTATATGGCTGGTGGCTCTGTTGCAGATCTGCTGCAGTCTGGGCAACCGCTTGATGAAATGTCAATTGCGTGCATTCTACGTGATTTGCTGCATGCAATTGATTATTTGCACAGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCACCAGAGGTAATTCAGAATTCTGAAGGATACAACGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAGTCCACCTCAGTTAGATGAGCATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGTTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCAGGAGAGAATAAGAGAACGGCCGAAGTACCAAATAAAGGAAGAAGAAGATGAAGAAACATCAACTAATGGTCCTAGAGCTATGGGTGAAATGTCAGACACCGTGAAAGTATCAAGAAATTTGAGAGAAGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCAAAGAATGCTGGATGGGACTTTAGCATTGGGGGACCAAATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAAATAGGGAAAGAAAACCAGAAATTCCTTATGCTCAGGCTGCATCTAGTAGAGTTCCAGAGAGTGGTAACTGGCTAGCAGCATCTGGAAATGCACCACGCGACATAGCAGAAAACGCTAGAGATTCATACAATATGGGGGATGCTAGTGAAGATGAAGATATATCTGTAAGTGGTTCAGGAACCGTCGTGATCCGGTCTCCTAGGGGATCTCAAGCATCTGCTCAAGTTCATAATGAAAGCAGTCCGTCTGGAAGTGCACAAGGATATTTTGAGGACACATCTTTTAGTGGCACTGTTGTTATGCGTGGTCAACGTGATGATTCTGATTCTCCCCGGACTCCAAAATCCAGATTGGGAGTTCAAGAAAGGTCTTCAAGTTTGTCTCCTGAAGATAGTGCAGCAAACCTTGCGGAGGCAATGGCTTCAATTCAAACAGGATTGAAGAAAGCTAATGCAAGGGAAAGATCAGCTCGCAATAAACTCAATGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCGTGAATTCTATGATGCACCAAGAGCATTGCCAAAACCATCTCTATCAATTGATGATGAAGAACGTGCCAAAATTGCATTGTCTTCTGCACCTTTATCGATTTTGTTTATGTCATCCTTGAAAGAGGTTGTTGCGGATGATTCGGAAGGATCACCTGCTCGTACCGTAATTAATGCACTTTTAAGTATGGAACACCTAAAACCTGGATCATGTGAGGTTCTTGTTACTAAGTTGCTCCAGAAATTGGCCAGTTCAAAGGAATCTTCACTGAAAGATTTACAAGACCTGGCAACTCGTATATTCAACAAGGGAAAGACAGTTCCTGAAGATACACAAAATGTCACAGATTCTGATAGCAGCAAAAGGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCGAGGGATCTCAGTCCAGCCTAA 2091 42.28 MSDVASIAEAVAARFSSLELIGRGSFGDVYKAFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHETKLWIIMEYMAGGSVADLLQSGQPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRESPPQLDEHFSRPMKELVSLCLKKIPVERPSAKELLKHRFIKNARKSPRLQERIRERPKYQIKEEEDEETSTNGPRAMGEMSDTVKVSRNLREETVRASNQSKTPKNAGWDFSIGGPNSTGTVRSVVKPPQNRERKPEIPYAQAASSRVPESGNWLAASGNAPRDIAENARDSYNMGDASEDEDISVSGSGTVVIRSPRGSQASAQVHNESSPSGSAQGYFEDTSFSGTVVMRGQRDDSDSPRTPKSRLGVQERSSSLSPEDSAANLAEAMASIQTGLKKANARERSARNKLNDRKENRRTEQTVSSSDSSRHSREFYDAPRALPKPSLSIDDEERAKIALSSAPLSILFMSSLKEVVADDSEGSPARTVINALLSMEHLKPGSCEVLVTKLLQKLASSKESSLKDLQDLATRIFNKGKTVPEDTQNVTDSDSSKRQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79237830 79251912 + Hsped.01g14000.1 Hepe01g1400 560510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1400 696 Coils Coil 41 68 - -
Hepe01g1400 696 MobiDBLite consensus disorder prediction 273 299 - -
Hepe01g1400 696 MobiDBLite consensus disorder prediction 504 552 - -
Hepe01g1400 696 MobiDBLite consensus disorder prediction 273 490 - -
Hepe01g1400 696 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 656 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Hepe01g1400 696 CDD STKc_MST3_like 14 287 - -
Hepe01g1400 696 Gene3D Transferase(Phosphotransferase) domain 1 12 304 - -
Hepe01g1400 696 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Hepe01g1400 696 SUPERFAMILY Protein kinase-like (PK-like) 13 329 IPR011009 -
Hepe01g1400 696 FunFam serine/threonine-protein kinase dst1 isoform X1 12 301 - -
Hepe01g1400 696 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1400 696 MobiDBLite consensus disorder prediction 411 460 - -
Hepe01g1400 696 MobiDBLite consensus disorder prediction 320 353 - -
Hepe01g1400 696 MobiDBLite consensus disorder prediction 508 529 - -
Hepe01g1400 696 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1400 696 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1400 696 Coils Coil 504 524 - -
Hepe01g1400 696 MobiDBLite consensus disorder prediction 647 670 - -
Hepe01g1400 696 MobiDBLite consensus disorder prediction 471 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1400 K08838 - - csv:101214412 1231.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1400 Hepe-Chr1:79237830 Hepe10g1802 Hepe-Chr10:54764390 7.33e-75 dispersed
Hepe01g1400 Hepe-Chr1:79237830 Hepe02g1817 Hepe-Chr2:27204815 7.49e-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1400 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.9 3.2e-222 768.5
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT1G53165 52.3 5.8e-67 252.7
Hepe01g1400 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.5 1.6e-229 792.7
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT3G15220 50.8 2.6e-67 253.8
Hepe10g1802 . 4 824 MAP Kinase Kinase Kinase Kinase AT1G69220 59.9 5.0e-243 837.8
Hepe02g1817 . 76 655 MAP Kinase Kinase Kinase Kinase AT5G14720 56.4 1.1e-187 653.7
Hepe02g3102 . 2 525 MAP Kinase Kinase Kinase Kinase AT5G14720 61.9 6.3e-175 611.3
Hepe06g0942 . 6 546 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 3.4e-144 509.2
Hepe05g1625 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.6 1.5e-96 350.9
Hepe06g0942 . 7 550 MAP Kinase Kinase Kinase Kinase AT4G24100 68.7 5.5e-201 698.0
Hepe02g1817 . 81 429 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.2e-132 469.2
Hepe06g0942 . 11 550 MAP Kinase Kinase Kinase Kinase AT4G10730 69.9 9.3e-206 713.8
Hepe02g1817 . 82 450 MAP Kinase Kinase Kinase Kinase AT4G10730 63.7 3.9e-135 479.2
Hepe02g1817 . 76 447 MAP Kinase Kinase Kinase Kinase AT1G70430 65.2 2.9e-139 492.7
Hepe02g1286 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.6 2.2e-134 476.5
Hepe06g0942 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.1 1.7e-118 423.7
Hepe02g1286 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 3.9e-217 751.5
Hepe02g1817 . 81 428 MAP Kinase Kinase Kinase Kinase AT1G79640 68.1 7.2e-147 518.1
Hepe02g1817 . 76 402 MAP Kinase Kinase Kinase Kinase AT1G23700 57.0 2.6e-98 356.3
Hepe02g1286 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 1.8e-86 317.0
Hepe06g0942 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.4e-75 278.9
Hepe02g3102 . 2 172 MAP Kinase Kinase Kinase Kinase AT1G23700 58.0 3.0e-49 193.4
Hepe05g1625 . 32 458 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 2.5e-136 482.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72467 PF00069 Pkinase 1.40E-68 CL0016 Hepe PK