Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1411 ATGGAGGCCGCGAACTCTCGTTCTAATGAAACTGGAGCGATTGGAAATGGAAGTGAAACTGATTTGAAGGTTCATGTGTTCTCATCATCATCCGAGTTGCTCGAAAAACTTCACGAGAAATGGAGTTTGGTGAAGAAGAAACCATATCCAGCAATGTATTCCAGCATTTTTGGTGGAATTATTACAGATCCAGCTATGATGGTGATTCCTATCGATGACCACATGGTTCATCGAGGCCACGGGGTGTTTGATACAGCCATTATTTTAAACGGACATTTGTATGAGTTGGACGCCCACCTCAACCGCTTCCTAAGATCGGCTTCAAAAGCAAAGATCTCTTCTCCCTTTCCCCGGTCAATTCTTCGGAGCATTCTTATCCAATTGACAGCAGCGTCGCAGCTCAAGAAAGGCACCTTGAGATACTGGTTAAGTGCAGGACCTGGAAATTTCTTGCTCACGCCCACTGTAAATGCCAATTCTGCATTCTATGCGGTAGCTATCGACGAAGATTTCTCTCAATGCAAAGAAGGGGTTAAAGTGATAACATCTACGATCCCGATGAAGACGCCTGAGTTTGCAACGATGAAGAATGTGAACTACCTACCAAATGTACTAGCCAAAATGGAAGCTGAAGAGAAAGGGGCATTTGCTTCCATTTGGGTTGATGAAGAAGGCTATATTGCAGAAGGTCCAAATGTGAATGTTGCATTTATAACCAGTGAAAACGAGCTTATCTTGCCTTCTTTCGATAAGATTCTCTCGGGGTGCACCGCTCTCCGACTTCTAAAGCTAGCTCCGAAGTTGGTCGAGGAGGGGAAGCTGAAGAGTGTAGGAACCGCAAACCTTACGGTGAAGGAAGCCAAAGGCGCTGCCGAAATGATGTTCGTAGGAAGCACGCTTCCCTTACTGCCAATCATCTCATGGGATGAAGAACCCATTGGAGATGGAAGCGTCGGAGAATTGACGATGGCTCTATCGGATCTGCTTTGGGAAGATATGGTTTCGGGCCCTGAAACAGAGAGAGTACCAGTTCCATACACATAG 1044 45.79 MEAANSRSNETGAIGNGSETDLKVHVFSSSSELLEKLHEKWSLVKKKPYPAMYSSIFGGIITDPAMMVIPIDDHMVHRGHGVFDTAIILNGHLYELDAHLNRFLRSASKAKISSPFPRSILRSILIQLTAASQLKKGTLRYWLSAGPGNFLLTPTVNANSAFYAVAIDEDFSQCKEGVKVITSTIPMKTPEFATMKNVNYLPNVLAKMEAEEKGAFASIWVDEEGYIAEGPNVNVAFITSENELILPSFDKILSGCTALRLLKLAPKLVEEGKLKSVGTANLTVKEAKGAAEMMFVGSTLPLLPIISWDEEPIGDGSVGELTMALSDLLWEDMVSGPETERVPVPYT 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79350596 79352924 + Hsped.01g14110.1 Hepe01g1411 560521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1411 347 CDD ADCL_like 73 329 IPR017824 GO:0008696(InterPro)|GO:0030170(InterPro)|GO:0046656(InterPro)
Hepe01g1411 347 Gene3D - 20 166 IPR043131 -
Hepe01g1411 347 FunFam D-alanine aminotransferase 169 336 - -
Hepe01g1411 347 Pfam Amino-transferase class IV 81 308 IPR001544 GO:0003824(InterPro)
Hepe01g1411 347 FunFam D-amino-acid transaminase, chloroplastic 29 167 - -
Hepe01g1411 347 Gene3D - 169 337 IPR043132 -
Hepe01g1411 347 PANTHER AMINO-ACID AMINOTRANSFERASE 41 340 IPR050571 GO:0019752(PANTHER)
Hepe01g1411 347 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 57 334 IPR036038 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1411 K18482 - - csv:101212163 631.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1411 Hepe-Chr1:79350596 Hepe01g2230 Hepe-Chr1:86972426 4.27e-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g177 . . . . . . . . . . . Cma09g00841 . Car09g00754 . . . Bhi09g03466 . . . Hepe01g1411 . . Cla11g01733 Cam11g1803 Cec11g1823 Cco11g1829 Clacu11g1962 Cmu11g1772 Cre11g2179 . Cone9ag0197 . . Lsi04g02043 Csa04g02315 Chy07g00050 Cme07g00568 Blo07g00954 . Bda05g00775 . . Bpe03g00842 . . . . Cmo09g00834 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011556 1 2 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 5 1 1 29