Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1422 ATGAAGCAATTTGATGCAGCAGTAGGTGACATAGCAATAGTATCAACGCGCTATAAACATGCAGAATTTACACATCCTTACGCTGAAGCAGGACTTGTGATGATTGTTCCTACCACAAAAGATAGAAGTAATACAGCATTGTTGTTCACAAAGCCGTTTACAGTGACCATGTGGATTGTAATTGCTGTGGTAAACGTCTACAATGGATTTGTTGTTTGGTTCATAGAGCGAAATCATGGTCCGGAACCTGAAGGTTCGATGTTTAATCAAGCTGGAACCATGCTTTGCTCATCCTTCACCACTCTATTCTCCTTGCATGGTAATAAGCTGCACAGCAACTTGTCGCGGATGAGCATGGTGGTTTGGTTATTTGTAGCACTTGTGATAACTCAGGTATACACAGCCAATCTTACTAGCATGCTCACTATTCAAAAGCTCGAACCGACTATATCGAATATTGAGACTCTCCACAGAATAAATGCATTCGTGGGATACGGCAGAGGATCCTTTGTCAAAGGATATTTGGAGAACGTTTTACGCTTTCCTGCAGAAACCATAAAAAACTACTCTACACCTGATGGTTTAGCCGATGCTCTCAGAAACCAAGAGATAGCAGCTACTTTTCTTGAAGTTCCTTTTGCAAAATTATTCATTGCAAGATTTTGCCAAGAGTTCATGATTTCTGGGTCAACCTACAAAGTTGGAGGATTTGGCTTTGCATTTCCGAGAGGCTCGCTGTTGTTACCGTATGTGAACGCAGCATTGCTTAAAGTATCTGAAACTGGGAAGTATAGAGAATTGGAGGACAACATGATTGCTAGTGAGAAATGTTTGGATGGGGAAGCAAAAGATGGAAGTCCAAGCCTCAGTCCCAACAGCTTCTTTTTACTATTTATATTGAGTGCAGGAGTATCAACAATAGCACTCGCATTGTACTTCCTTAAAGCTCATGACTCTAATTTTCAACAAAATACTATTTGGAGATTAATGATGGCTGTAATGAGATACTGGAGAAATCATGGAAGGCGATTTTCTCGACGGGTAAACGAAGAGCCACGAATTGCCTCGAATAACTTCCCGAACGCGACAAACATGCGAATTCAAGTCTAG 1110 41.08 MKQFDAAVGDIAIVSTRYKHAEFTHPYAEAGLVMIVPTTKDRSNTALLFTKPFTVTMWIVIAVVNVYNGFVVWFIERNHGPEPEGSMFNQAGTMLCSSFTTLFSLHGNKLHSNLSRMSMVVWLFVALVITQVYTANLTSMLTIQKLEPTISNIETLHRINAFVGYGRGSFVKGYLENVLRFPAETIKNYSTPDGLADALRNQEIAATFLEVPFAKLFIARFCQEFMISGSTYKVGGFGFAFPRGSLLLPYVNAALLKVSETGKYRELEDNMIASEKCLDGEAKDGSPSLSPNSFFLLFILSAGVSTIALALYFLKAHDSNFQQNTIWRLMMAVMRYWRNHGRRFSRRVNEEPRIASNNFPNATNMRIQV 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79424977 79426300 - Hsped.01g14220.1 Hepe01g1422 560532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1422 369 Gene3D - 190 237 - -
Hepe01g1422 369 Gene3D - 43 174 - -
Hepe01g1422 369 SMART GluR_14 59 274 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe01g1422 369 FunFam Glutamate receptor 46 184 - -
Hepe01g1422 369 SUPERFAMILY Periplasmic binding protein-like II 2 269 - -
Hepe01g1422 369 Gene3D - 238 269 - -
Hepe01g1422 369 Pfam Ligand-gated ion channel 270 302 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe01g1422 369 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 317 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Hepe01g1422 369 Pfam Bacterial extracellular solute-binding proteins, family 3 2 54 IPR001638 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1422 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1422 Hepe-Chr1:79424977 Hepe08g1459 Hepe-Chr8:17686919 1.54e-61 dispersed
Hepe01g1421 Hepe-Chr1:79417526 Hepe01g1422 Hepe-Chr1:79424977 4.17e-184 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68