Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1460 ATGGTTGGAATCTGGGACATGGATTTTGCTGTTTGGAATTTTTCAAAAAGTGTTCTTGTTTTTGGGTTTCTGATTTTGAACTGCTTCCTGGGATTTGGATCCGATGCACAATCTCTGCCTGAACAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAATTTAAACTGGAATGTTCACCAAAATTCTTGCATTAATGGCGATGGATTTTCCAATAGAGCTTTCCTTGGTACTGATATTATCAGAGAGGTGAATTGCACTTGTACCACTGTTTGCAGTGTCACTTCCATTCGGCTAAAGGGTCTCAATCTAACTGGAATTTTGCCAGCAGCATTTGGAAATCTGACTCGGCTACAAAGGATAGATCTTACTCGCAATTTAATATCCGGATCAATCCCAAGAGAGTTTGCTCGGATTCCTCTTGTTGATTTATCCATGTTGGGAAACAGGCTAAGTGGTCAGATTCCTCCAGAAATTGGTGACATTGCTACACTTGAGCATCTGGTTTTGGAAGACAATCTCCTTGGAGGGAATCTTCCCGAAAGCCTCGGGAGACTGAGCCGCTTGCAAAGATTACTTCTTAGTGCAAATAATTTCACGGGGTCGATTCCAAACTCTTATGGAAACTTGAGGAACTTGACTGATTTTCGGATTGATGGAAATGATGTATCAGGAAAACTTCCTGAATTTATTGGCAATTGGACCAAACTTGATAGACTGGATATTCAAGGAACTTCTATGGAGACCCCCATTCCTCGTGCCATATCCGAGTTGAAAAACTTAACTGAATTGAGGATAACTGATTTGAAGGGTCTGCCAACAAGATTTCCCAATTTGACTCTATTGACATCTTTGCAAGAATTGGTCCTAAGAAATTGCTTAATTGAAGATCGTATTCCTGAATATATTGGACTGTTCACTAGCTTAAAAACTTTAGATCTAAGCTTCAACGAATTGAATGGTCCAATTCCAGACACGTTTCAGAATCTCGGAAGAGTTACTCAGTTCTTGTTTTTGACCAACAACTCAATAAGTGGACAAGTACCAAGCTGGATCTTGAACAGTGAAAGGAGCATAGATTTATCTTACAACAATTTTACAGGGTCCCCTGTTTCAAGTTGTCAACAATCTGAAGTGAACTTGGTTTCGAGTTATTCAACTACAATGAATGAAACTGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGTCCTATAGGAACTCGATTTCATTCCTTGTTCATAAATTGTGGAGGCCAAAGGATGGAGCTTGATGGTAATGAATATGAAGAGGATGTAACTATAGGTGGCAAGTCCAATTTCCATTCTGTTTCAGACAGATGGGCTTTTAGCAGTACTGGTGTTTTCCTGGGAAATGAGAATGCTGATTACAGAGTAACAAGTACCAATGTGTCTGTTTCGAGCGTCTACCAAACTGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGCTTAAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTACACTGCAGACCAAACATTCAGCAGCTTGGGCGAGCGCATATTTGATATCTCAATTCAAGGAAACTTGGTTAAAAAAGATTTTAACATTATGGAGGAAGCTGGAGGTGTTGGTAAGAGCTATATTTTAGAAGAGCCTAATATTTTGGTCAATGGAAGCACACTTGAGATCCACTTGTATTGGGCTGGTAAAGGAACAAACGCCATTCCGGAGAGAGGGGTGTATGGACCTTTGATATCTGCAATCACTATGACATCGACTTTTAAAGATACGGTGGATTTTGATTTGAAGACGGGAGGACTATCAGCTGGAGCTATAGCAGGCATTGTTGTTGGTACTTTTGTGTTCATTGTGTTAGTATTGATTGTTCTTCGAAAGAAATTGGGCAATAAAGACACCGAAGACAGCGAATTGCGGGCCCTTGATCTAAGGGTGGATTATTTCAGTTTAAGACAAATTAAAGCAGCCACCAACAACTTCGACTTGGCAAATAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGTGTACTCTCGGATGGTACTTTAATTGCCGTAAAACAACTATCCTCTAAATCAAGTCAGGGGAATCGTGAATTTGTTACTGAGATTGGCATGATTTCTGCATTACAACATCCAAATCTTGTTAAACTTTATGGTTGTTGTATTGAAGGAAACCAGTTGTTGCTTATATATGAGTATTTGGAGCACAATAATCTTGCCGATGCCCTTTTTGGCCCTGAGGAGCATCTACTACAATTGGATTGGCCAATAAGAATGAAGATATGTTTGGGAATAACTAAGGGTTTGACTTACCTTCATGAAGGATCTAGATTGAAAATTGTTCACAGAGATATAAAAGCCGCTAATGTGCTACTTGATAAAAACCTAAATGCCAAGATCTCTGACTTCGGGTTGGCTAAGCTTCATGAAGAGGAGAACACCCACATCAACACAAGAATTGCGGGCACTATGTCTCTCTCTCATCCCAATTTAGCTCATACTCTTTGA 2544 40.29 MVGIWDMDFAVWNFSKSVLVFGFLILNCFLGFGSDAQSLPEQEVRALQAISAELRNLNWNVHQNSCINGDGFSNRAFLGTDIIREVNCTCTTVCSVTSIRLKGLNLTGILPAAFGNLTRLQRIDLTRNLISGSIPREFARIPLVDLSMLGNRLSGQIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLQRLLLSANNFTGSIPNSYGNLRNLTDFRIDGNDVSGKLPEFIGNWTKLDRLDIQGTSMETPIPRAISELKNLTELRITDLKGLPTRFPNLTLLTSLQELVLRNCLIEDRIPEYIGLFTSLKTLDLSFNELNGPIPDTFQNLGRVTQFLFLTNNSISGQVPSWILNSERSIDLSYNNFTGSPVSSCQQSEVNLVSSYSTTMNETVAWCLRKDLPCPIGTRFHSLFINCGGQRMELDGNEYEEDVTIGGKSNFHSVSDRWAFSSTGVFLGNENADYRVTSTNVSVSSVYQTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTADQTFSSLGERIFDISIQGNLVKKDFNIMEEAGGVGKSYILEEPNILVNGSTLEIHLYWAGKGTNAIPERGVYGPLISAITMTSTFKDTVDFDLKTGGLSAGAIAGIVVGTFVFIVLVLIVLRKKLGNKDTEDSELRALDLRVDYFSLRQIKAATNNFDLANKIGEGGFGPVYKGVLSDGTLIAVKQLSSKSSQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLEHNNLADALFGPEEHLLQLDWPIRMKICLGITKGLTYLHEGSRLKIVHRDIKAANVLLDKNLNAKISDFGLAKLHEEENTHINTRIAGTMSLSHPNLAHTL 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79842354 79874016 - Hsped.01g14600.1 Hepe01g1460 560570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1460 847 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 205 272 - -
Hepe01g1460 847 ProSiteProfiles Protein kinase domain profile. 670 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1460 847 Pfam Protein tyrosine and serine/threonine kinase 672 827 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1460 847 Gene3D Transferase(Phosphotransferase) domain 1 746 846 - -
Hepe01g1460 847 FunFam Os07g0541700 protein 746 835 - -
Hepe01g1460 847 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515(InterPro)
Hepe01g1460 847 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
Hepe01g1460 847 Pfam Leucine Rich Repeat 190 212 IPR001611 GO:0005515(InterPro)
Hepe01g1460 847 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Hepe01g1460 847 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 33 844 IPR051824 -
Hepe01g1460 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1460 847 SUPERFAMILY Protein kinase-like (PK-like) 652 836 IPR011009 -
Hepe01g1460 847 Gene3D Ribonuclease Inhibitor 272 397 IPR032675 -
Hepe01g1460 847 Gene3D Phosphorylase Kinase; domain 1 633 745 - -
Hepe01g1460 847 Gene3D Ribonuclease Inhibitor 72 271 IPR032675 -
Hepe01g1460 847 Gene3D - 412 598 - -
Hepe01g1460 847 SMART serkin_6 670 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1460 847 Pfam Malectin domain 414 592 IPR021720 -
Hepe01g1460 847 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 411 597 - -
Hepe01g1460 847 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 745 - -
Hepe01g1460 847 SUPERFAMILY L domain-like 87 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1458 Hepe-Chr1:79804377 Hepe01g1460 Hepe-Chr1:79842354 4.44e-262 dispersed
Hepe01g1460 Hepe-Chr1:79842354 Hepe07g0962 Hepe-Chr7:12912952 2.16e-297 dispersed
Hepe07g1898 Hepe-Chr7:62648987 Hepe01g1460 Hepe-Chr1:79842354 3.62e-06 dispersed
Hepe01g1459 Hepe-Chr1:79824025 Hepe01g1460 Hepe-Chr1:79842354 0.0 tandem
Hepe01g1460 Hepe-Chr1:79842354 Hepe01g1461 Hepe-Chr1:79885916 7.30e-159 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72471 PF11721 Malectin 4.50E-40 CL0202 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1460 - - - 0.0