Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1462 ATGTTTGTGGCTCGATTCCTCTCCGTTGTTTTTCTCTTATCTTTCACTTCCGACGCGGCTCGGCTGCCCGACGACGAAGTTGAGGCGTTGAGGGAGGTTGGAAAGAGATTGGGGAAGATGGACTGGAATTTCATGGCTGATCCATGCGGCGGTTTGAGCACCGGTTGGATATCGACTTCTTTCGACACTAGTTTTGTTAATAATGTCACCTGCAACTGTACCTTCCAAGATAATACTGCATGTCACGTTACTAATATGGTTCTAAGGGCACAGAGCCTTCCAGGTACTCTGCCACCGCAGATAGTGAGGCTGCCTTTCCTGCAGCAACTTGATCTCGCCCGGAACTACCTCAGCGGCCCAATTCCTCCAGAATGGGGTTCCACCAAGCTTGTCAAACTCAACGTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAATTGAACCTTGAAATTAATCATTTCTCTGGAAGTTTACCTCCAGAACTTGGAAATTTGACCAACTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAACTCCCACCTTCACTGGCAAGGATATCCTCATTGACGGACTTTCGAATTAGTGATAATCACTTCACAGGGCCAATACCTAAGTTCATTCAGAGTTGGACGAATCTTGGAAATGTAGCTATTCAGGGAAGCGGGCTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAACTTAACTGATGTGAGAATTAGCGACTTGAATGGAGGTTCATCACCCTTTCCACCCCTTAATACTTTGACAAAATTGGAAACCCTGATATTGAGGAGTTGCTACATAACTGGGGTGCTGCCCGACAATCTTGATGGCTTGACAAACGTGCGAACTTTAGACTTCAGCTTCAACCAAATTGCTGGACCAATACCTGCCAGCTTTGAAGCTTTGAAAAAAGTGGATAGAATATTTTTATCTGGAAACTTGCTAAATGGATCAGTGCCTCTTTGGATGATACATGATGGAGAAAACATTGATCTCTCTTATAACAAATTTACTCAGAGAAATGTTCATAACACTGGTTGTGAATCACGAAGTTTAAACTTGTTTGCGAGCTCTTCACAGGACCATAATTCCTCTGGAACAATTTCATGCTTAGCGGGCACTTGTGGAAAAACTTGGTACTCTCTCCATATCAACTGCGGTGGGAAGGAAGAATTAATTAACGGAACAATCAAGTTTGATGGAGACACAAACACTGGCAAATCATCATTGTTTTTTCAAGGTGGAGAAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATCGTTCAACAGACGACTTTATTGCATTAAGTTCATCTCCACTCTCAATGCCAAATCCTGAATTGTACACCAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGTGTATTGCATGGGTAATGGAAACTACACAGTAAGCCTCCATTTTGCTGAAATAGCGTTTACTAATGACAAATCATATAGAAGCCTTGGCAGACGCATATTTGATGTCTACCTTCAGGGAAAGCTGGAAGTGAAGGACTTTAATATTGCAGATGCAGCCGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTCCTGTAACTAATGGTACTATAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACAATTGCAATCCCTGGAAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGTGCCACCATCAGAAGGTGGAAATGCCATATCTGCCGGTGCAGTGGTTGGCATTGGGGCGGCTGTGGTTTTTGTCATCATCTTGGTTCTTGGAGTCTTGTGGTTGAGAGGCAGCCGGAGAAAGAAAAGCACACTCGAGCAAGAGTTGGAGGACCTAGATCTAGAAACAGGTTCATTTTCATTAAAACAAATCAAAGCTGCCACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTTCAAGGGTGTTCTTGCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAAGGAAATCGCGAATTTTTGAATGAGATAGGCATGATATCTGCTTTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGCTGTATTGAAGGAGATCAACTTTTACTAATATACGAGTATCTGGAAAATAATAGCCTTGCTCGTGCCTTATTCGGGAAGGATGTTGTGAAGGAGGTGGTTTCAGATCCTAGTGTCTCAAAACAAGATGTGAATGCAGTGTGA 2304 42.88 MFVARFLSVVFLLSFTSDAARLPDDEVEALREVGKRLGKMDWNFMADPCGGLSTGWISTSFDTSFVNNVTCNCTFQDNTACHVTNMVLRAQSLPGTLPPQIVRLPFLQQLDLARNYLSGPIPPEWGSTKLVKLNVLGNRLTGPIPKEIGNISTLVELNLEINHFSGSLPPELGNLTNLSRLLLTSNNFSGELPPSLARISSLTDFRISDNHFTGPIPKFIQSWTNLGNVAIQGSGLSGPIPSEIGLLTNLTDVRISDLNGGSSPFPPLNTLTKLETLILRSCYITGVLPDNLDGLTNVRTLDFSFNQIAGPIPASFEALKKVDRIFLSGNLLNGSVPLWMIHDGENIDLSYNKFTQRNVHNTGCESRSLNLFASSSQDHNSSGTISCLAGTCGKTWYSLHINCGGKEELINGTIKFDGDTNTGKSSLFFQGGENWGFSNTGSFMDDDRSTDDFIALSSSPLSMPNPELYTRARISPISLTYYVYCMGNGNYTVSLHFAEIAFTNDKSYRSLGRRIFDVYLQGKLEVKDFNIADAAGGVGKPFVKKFTVPVTNGTIEIRLFWAGKGTIAIPGRGVYGPLISAISVDPDFVPPSEGGNAISAGAVVGIGAAVVFVIILVLGVLWLRGSRRKKSTLEQELEDLDLETGSFSLKQIKAATNNFDAANKIGEGGFGPVFKGVLADGTVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGKDVVKEVVSDPSVSKQDVNAV 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79899219 79921393 + Hsped.01g14620.1 Hepe01g1462 560572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1462 767 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 259 - -
Hepe01g1462 767 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 628 734 - -
Hepe01g1462 767 SUPERFAMILY L domain-like 52 339 - -
Hepe01g1462 767 Pfam Protein tyrosine and serine/threonine kinase 662 744 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1462 767 Pfam Leucine Rich Repeat 177 197 IPR001611 GO:0005515(InterPro)
Hepe01g1462 767 Pfam Leucine Rich Repeat 107 126 IPR001611 GO:0005515(InterPro)
Hepe01g1462 767 Pfam Leucine Rich Repeat 154 175 IPR001611 GO:0005515(InterPro)
Hepe01g1462 767 Gene3D Ribonuclease Inhibitor 257 367 IPR032675 -
Hepe01g1462 767 Gene3D Phosphorylase Kinase; domain 1 623 734 - -
Hepe01g1462 767 Coils Coil 623 643 - -
Hepe01g1462 767 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515(InterPro)
Hepe01g1462 767 Gene3D - 396 586 - -
Hepe01g1462 767 Gene3D Ribonuclease Inhibitor 186 256 IPR032675 -
Hepe01g1462 767 ProSiteProfiles Protein kinase domain profile. 659 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1462 767 Pfam Malectin domain 398 582 IPR021720 -
Hepe01g1462 767 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 748 IPR051824 -
Hepe01g1462 767 SUPERFAMILY Protein kinase-like (PK-like) 642 749 IPR011009 -
Hepe01g1462 767 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 396 587 - -
Hepe01g1462 767 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1462 Hepe-Chr1:79899219 Hepe01g1464 Hepe-Chr1:79952648 4.91e-255 dispersed
Hepe01g1461 Hepe-Chr1:79885916 Hepe01g1462 Hepe-Chr1:79899219 0.0 tandem
Hepe01g1462 Hepe-Chr1:79899219 Hepe01g1463 Hepe-Chr1:79934998 1.13e-233 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72473 PF11721 Malectin 2.60E-42 CL0202 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1462 - - - 0.0