Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1472 ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACGAATTCGCCAAAAGGAGGATCAATCTCTCGATTCATGTTCCCTCCCAGCCAAGAAGCGAAAGGAGTCTCGTGATTCATCCTTCCGACCCGCCATGTCCGCTTCTCCTTACTCCTTGCCGACCAAGAAAAGAGTCTGGGCACTTCATCCTGATTTCGCCCCTGAATCGCTAGATCTCAATGTTGAATACAAGCCCTCTCTAGAGGAAGATTCGATTTCTAAAACCGAACCAGAGAGAGAGGAAAAGGAGATTTCTGATGTTGAGATTGAGATTCCAGCGTTTGAATCTATCCAAGATGAAGATGAAGATGAAGACGATGGGATTCTCTGTGCGATTTGTCAAAGCACGGATGGGGATCCTACGGATCCAATCGTGTTCTGCGATGGATGCGATTTGATGGTACACGCTTCCTGTTATGGTAATCCTCTGGTGAAGAGCGTACCGGAAGGCGATTGGTTCTGTACCCAATGCTTAGCTTCTTCTTCGTCTTCCAAGACGGAGAAGAACGTTTCAGAAACTCCATTTTCATGCTGCCTTTGTCCTCTCAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTTTGTGGGCTATTAGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGCAGAGAAGGGATCGATTGCTCGAAGATTCCGAAGAGGAGATGGAAATCCAAATGTTATATCTGCAAAGCTTCTAGAGGTTGTGCTATTGACTGCTCAGAGCCTAAGTGTAGTTTGGCTTTTCATGTTACTTGTGGGTTGGAGGAGGATCTTTGTATTGAGTACAAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGCTTCTGCAGAAACCATACTGACTTGTGGAAAAAGCAACAACTAACAGGAAAGTTCAAGATTGTGGCCAGAGATGAAGCTAAGTTGTAG 987 46.3 MDSLHGLPPLKRLRILQEQERIRQKEDQSLDSCSLPAKKRKESRDSSFRPAMSASPYSLPTKKRVWALHPDFAPESLDLNVEYKPSLEEDSISKTEPEREEKEISDVEIEIPAFESIQDEDEDEDDGILCAICQSTDGDPTDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCTQCLASSSSSKTEKNVSETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLLVPEVFFEDPDGREGIDCSKIPKRRWKSKCYICKASRGCAIDCSEPKCSLAFHVTCGLEEDLCIEYKEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEAKL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80049013 80051027 + Hsped.01g14720.1 Hepe01g1472 560582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1472 328 CDD PHD_BRPF_JADE_like 129 177 - -
Hepe01g1472 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 185 IPR013083 -
Hepe01g1472 328 PANTHER PHD FINGER PROTEINS 76 306 IPR050701 GO:0006357(PANTHER)
Hepe01g1472 328 MobiDBLite consensus disorder prediction 22 56 - -
Hepe01g1472 328 Pfam PHD-zinc-finger like domain 196 292 - -
Hepe01g1472 328 SUPERFAMILY FYVE/PHD zinc finger 115 182 IPR011011 -
Hepe01g1472 328 SMART PHD_3 129 178 IPR001965 -
Hepe01g1472 328 SMART PHD_3 251 306 IPR001965 -
Hepe01g1472 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 308 IPR013083 -
Hepe01g1472 328 Pfam PHD-finger 130 177 IPR019787 -
Hepe01g1472 328 ProSiteProfiles Zinc finger PHD-type profile. 127 180 IPR019787 -
Hepe01g1472 328 MobiDBLite consensus disorder prediction 22 47 - -
Hepe01g1472 328 ProSiteProfiles Extended PHD (ePHD) domain profile. 194 306 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1472 Hepe-Chr1:80049013 Hepe07g0068 Hepe-Chr7:644193 1.55e-24 dispersed
Hepe01g1472 Hepe-Chr1:80049013 Hepe03g0942 Hepe-Chr3:44864538 3.10e-34 transposed
Hepe01g1472 Hepe-Chr1:80049013 Hepe03g0965 Hepe-Chr3:49032355 3.09e-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54834 PF13832 zf-HC5HC2H_2 1.30E-29 CL0390 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1472 K11380 - csv:101203744 575.474