Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1475 ATGTCAACAATGGCTTCCAGAAGTTTGAATTTATCGATTCCAACTGGGTTAATCAATTCTTCCAAAGCCCAACAAAATTTCAAGTTTGTTTCTTTATCTTCTCCTCCAAGTTTCAGAGCACTCAAAAAGCTTTCAAATTCATCATCTTCTATTCGTGCAATGGGCTCCTCCTCCTCTTCCCAACGACCAGATGGCATCCAAGAGGCTGGCGCAGTGGATTACAGATCTCTAAGCGGCGATGAATGGAAAAAGCGGCTCACAGGCGAGCAGTTTTATGTTACTCGTCAGAAGGGAACTGAGAGAGCTTTTACCGGTGAGTATTGGAACACCAAAACGCCAGGGATATACCACTGTATATGTTGCGACACGCCTCTGTTTGAATCATCTACTAAATTTGATAGTGGAACTGGTTGGCCATCGTATTACCAGCCTGTTGGTGATAATGTCAAATCCAAGCTAGATCTGTCCATTATTTTCATGCCTCGAGAGGAAGTTCTTTGTTCTGTTTGTGATGCTCATCTGGGCCATGTATTTGATGATGGACCGCCGCCGACCGGGAAGCGTTTCTGCATCAATAGCGCTTCGCTGAAATTGAAGCCGAAGTAA 606 44.39 MSTMASRSLNLSIPTGLINSSKAQQNFKFVSLSSPPSFRALKKLSNSSSSIRAMGSSSSSQRPDGIQEAGAVDYRSLSGDEWKKRLTGEQFYVTRQKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREEVLCSVCDAHLGHVFDDGPPPTGKRFCINSASLKLKPK 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80061257 80065475 + Hsped.01g14750.1 Hepe01g1475 560585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1475 201 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 78 200 IPR002579 GO:0033743(InterPro)
Hepe01g1475 201 Pfam SelR domain 81 200 IPR002579 GO:0033743(InterPro)
Hepe01g1475 201 Gene3D Peptide methionine sulfoxide reductase. 69 201 - -
Hepe01g1475 201 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 79 201 IPR002579 GO:0033743(InterPro)
Hepe01g1475 201 FunFam Peptide methionine sulfoxide reductase MsrB 71 201 - -
Hepe01g1475 201 PANTHER METHIONINE SULFOXIDE REDUCTASE 46 200 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Hepe01g1475 201 SUPERFAMILY Mss4-like 77 200 IPR011057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1475 K07305 - - csv:101203253 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1475 Hepe-Chr1:80061257 Hepe05g1503 Hepe-Chr5:64508242 6.82e-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g15 . . . . . . . . . . . . . Car09g00602 . Cpe06g00532 . Bhi09g03579 . . . Hepe01g1475 . . Cla11g01675 Cam11g1742 Cec11g1767 Cco11g1768 Clacu11g1900 Cmu11g1711 Cre11g2125 . Cone9ag0242 . . Lsi04g01969 Csa04g02248 . . . . . . . . . . . . Cmo09g00664 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006816 2 4 1 7 1 0 1 1 0 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 35