Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1589 ATGCTGAAGTCGAAGCCCTTCGCCGGAGCCAATGTGTTCGTGTCCCGTAATCTCGTTGCTCCGGAGATATTCGACGCTCTTCACGACGCTTTGAAGCAGAATGGGGCTCAGGTCTTCCTCTGTTGCGATCCCTCCCGAAACGGGCCGAATGACTATCATGTTATCTCCTCCGCCGATCACGAAAAGTTTGAGGATCTTCGCGCGAAGAGATGCACTTTGCTAGGTCCTCAGTGCGTGCTTTCATGTGCAAAAGAGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCTTTGGATGGTGTGAAAATTCTGGCATCCGGTTTTCAGGCGGATGAAAAGGTTGAGATAGAGAAGTTAGTTACTGCAATGGGAGGAATATTGCATTCGAAAGCATCTCTGGATGTCACCTTTGTCATCGTGAAGAATGTTTTGGCTGCAAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATTGTCACAATTGCTTGGTTACAACAGTGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCTTCCATTTTCTGGGTTGAATATTTCGGTATCTAGAATTCCAGCAGATGAGCGCAAGGAGATTGAAAAGCTTATCTTGCTAAATGGTGGAAGATATTCTGCTGATCTTACAAGAAAGTGTACACATTTGATATGTATTATATCCTTTTCTCCTGAAGGTGACAAGTACAAGGTTGCACGAACATGGGGCCATATCAATATTGTAGCTCGGAAATGGTTTGATCAATCCATAGCTAGAAGAGCATGTCTTAATGAGGAGTCGTACCCTGTTGGTTGCGTTTCTGGAACTTCAAATAAAATGGCAAGGGGTTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTATTGGGAACTTGCAAGCTGCACCCTCCTCCTTTATTGCCGATTCAGCAGTTTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATTCTTCTCATTTTATAAAGGAGGTTGTAGTTGAAGTGCCAGTTACAATGCCAAAGGACGAAGCAAGCACTGATAATTGTTTTGCAAATGACTTCCAATCTGAAGACAATGACCTATATCTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGCAAGATTGTGAATATGATTCGCAGTGGTGGAGGCTCCCGGTACATGCTGTTCAATGACAAGTTAACACACATAATAGTTGGAAATCCGTCGGAAATGGAGAAAAAGGAGGTAAGAGATATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCACTTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCTGTTCTTAGCAGACATATAGCCTATGATGAACTTATTCCTAAAGGTTTCATATCATCCAGTAAAACAAGCAGCATCGTTATGGATCAGAATAAAGTTTCTAATGTTCATCCAATCATGCCGTCAAATGAATTGGAAGGAAATATTCATGTTAGAACTGGAAAGACATCAATGATAGAGGAAAAAATTCAAGAAAAAAGTGAAGCAAATATGAGTGGAGACAGGACCATTAAATTATCCCAGAAAAGCCAACCTTCTGTAGCAAATGGTAGAAACAGGAGTCAAGAAAAGATGCAGCGTGATTTCATGGATACAAATGGGAAGTCATCATGTGTGTTTAAGGGGAAATTATTTTGGTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAGGTTGTTGAGGATAATATGAAACAGAAAGTGCACTTCACTGTTGAAAGTCATGGTGAGGCTCCAAGGAGTGCAGATGTTCATACTACATGCGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGCGGGATACCAATGGGCACATTCTCTACTCTCCACTTCCTTGTTGTGTCCCTTTGCCTGGGTTTAAAAATATTCGGTTCTGTGTTTCACAATATGAAGATAAAGATAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAAGCCGCTTGTAAATGGGGAATACATTCAATTACAGCAGAATGGATATATGAGTGCGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGACAGAGAGGCAGGCTTATGCACTGTAAGTCAGTTTCCTACTCAAGCTGTCCAAATGATAGCCGGTGAAAGTCAATCTCAGTTCCCTATCCGTTCTGCTATCCTGAGAGACCGATCAGCTGGAACTAACAGTAGCTCTATGGGAGAAGTTGAAAAATTAAGTTTTTCTAATAAAAGGCTCAAGTATCTTGACGAAGCTATACAAAAGCCTCCACTTTTTGTTGGAAACAGTCTCACTCCTTTTGACTGCAATTTGAACGCCACAAGACAAACTACATCAAAATCTTCTGTAGTAACTTCACGTGTTCCTGATGTCGCTTCCGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAGGTATTTTCCCGCCTCACTGTTCGGTCATTGGTCAAGACCATTCAGAAGCTCATCCAAGTAGTGATTTATCTAACCAGTGGTTAAAAAGAGCTGAAAGAATAGAAGACGTCAGCAATCCTACTACTGGAGATGGGAGTGCAGGCATATATGATGGTTTTAGTGAAACACAAACTGAGTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCGGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCATGACTTAA 2922 42.2 MLKSKPFAGANVFVSRNLVAPEIFDALHDALKQNGAQVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKRCTLLGPQCVLSCAKEYRPLPQQGFTCCLALDGVKILASGFQADEKVEIEKLVTAMGGILHSKASLDVTFVIVKNVLAAKYKWALNISKKPIVTIAWLQQCWIEHRVVPQEGYRVLPFSGLNISVSRIPADERKEIEKLILLNGGRYSADLTRKCTHLICIISFSPEGDKYKVARTWGHINIVARKWFDQSIARRACLNEESYPVGCVSGTSNKMARGCLTAHNSQEKVIGNLQAAPSSFIADSAVSGPGFSDMDLEATLSQSTSMFSDSSHFIKEVVVEVPVTMPKDEASTDNCFANDFQSEDNDLYLSACRIKVVGFEASEMRKIVNMIRSGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTTWLEDCDRQKKEIPVLSRHIAYDELIPKGFISSSKTSSIVMDQNKVSNVHPIMPSNELEGNIHVRTGKTSMIEEKIQEKSEANMSGDRTIKLSQKSQPSVANGRNRSQEKMQRDFMDTNGKSSCVFKGKLFWFSSSFPEDRRAEIVEWINQGGGEVVEDNMKQKVHFTVESHGEAPRSADVHTTCVSSHWVRSCLEDGCLRDTNGHILYSPLPCCVPLPGFKNIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSITAEWIYECVRQSKIVSLDLYRPKEVTAQDREAGLCTVSQFPTQAVQMIAGESQSQFPIRSAILRDRSAGTNSSSMGEVEKLSFSNKRLKYLDEAIQKPPLFVGNSLTPFDCNLNATRQTTSKSSVVTSRVPDVASAIEDLLEQTTKIHDQKSPGKTGCDKGIFPPHCSVIGQDHSEAHPSSDLSNQWLKRAERIEDVSNPTTGDGSAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMT 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81089520 81098633 + Hsped.01g15890.1 Hepe01g1589 560699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1589 973 FunFam Transcription coactivator 355 465 - -
Hepe01g1589 973 SUPERFAMILY BRCT domain 186 275 IPR036420 -
Hepe01g1589 973 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Hepe01g1589 973 Gene3D BRCT domain 563 659 IPR036420 -
Hepe01g1589 973 ProSiteProfiles BRCT domain profile. 182 274 IPR001357 -
Hepe01g1589 973 SUPERFAMILY BRCT domain 570 655 IPR036420 -
Hepe01g1589 973 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 803 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Hepe01g1589 973 Pfam twin BRCT domain 103 166 IPR001357 -
Hepe01g1589 973 Pfam twin BRCT domain 190 256 IPR001357 -
Hepe01g1589 973 Pfam twin BRCT domain 670 731 IPR001357 -
Hepe01g1589 973 CDD BRCT 103 170 - -
Hepe01g1589 973 FunFam DNA topoisomerase II binding protein 1 187 282 - -
Hepe01g1589 973 SUPERFAMILY BRCT domain 629 750 IPR036420 -
Hepe01g1589 973 ProSiteProfiles BRCT domain profile. 566 653 IPR001357 -
Hepe01g1589 973 FunFam Transcription coactivator 97 185 - -
Hepe01g1589 973 ProSiteProfiles BRCT domain profile. 666 749 IPR001357 -
Hepe01g1589 973 MobiDBLite consensus disorder prediction 524 556 - -
Hepe01g1589 973 CDD BRCT_TopBP1_rpt3 372 456 - -
Hepe01g1589 973 FunFam Transcription coactivator 563 659 - -
Hepe01g1589 973 Gene3D BRCT domain 664 756 IPR036420 -
Hepe01g1589 973 SUPERFAMILY BRCT domain 57 184 IPR036420 -
Hepe01g1589 973 Gene3D BRCT domain 185 276 IPR036420 -
Hepe01g1589 973 CDD BRCT_TopBP1_rpt2_like 186 264 - -
Hepe01g1589 973 SMART BRCT_7 663 739 IPR001357 -
Hepe01g1589 973 SMART BRCT_7 568 643 IPR001357 -
Hepe01g1589 973 SMART BRCT_7 4 86 IPR001357 -
Hepe01g1589 973 SMART BRCT_7 184 264 IPR001357 -
Hepe01g1589 973 SMART BRCT_7 97 174 IPR001357 -
Hepe01g1589 973 SMART BRCT_7 375 455 IPR001357 -
Hepe01g1589 973 ProSiteProfiles BRCT domain profile. 373 465 IPR001357 -
Hepe01g1589 973 Gene3D BRCT domain 358 462 IPR036420 -
Hepe01g1589 973 CDD BRCT_TopBP1_rpt2_like 664 739 - -
Hepe01g1589 973 Pfam BRCA1 C Terminus (BRCT) domain 378 451 IPR001357 -
Hepe01g1589 973 MobiDBLite consensus disorder prediction 531 551 - -
Hepe01g1589 973 Gene3D BRCT domain 32 94 IPR036420 -
Hepe01g1589 973 Gene3D BRCT domain 97 184 IPR036420 -
Hepe01g1589 973 SUPERFAMILY BRCT domain 375 459 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1589 K10728 - - csv:101212525 1561.58
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0483 . 59 785 Core DNA Replication Machinery Family AT4G14700 66.1 2.2e-275 945.3
Hepe06g0483 . 93 785 Core DNA Replication Machinery Family AT4G12620 69.9 1.9e-282 968.8
Hepe10g0715 . 2 361 Core DNA Replication Machinery Family AT2G37560 66.7 3.3e-143 505.0
Hepe01g0676 . 2 334 Core DNA Replication Machinery Family AT2G01120 65.3 5.8e-126 448.0
Hepe03g0562 . 3 535 Core DNA Replication Machinery Family AT4G29910 56.7 2.2e-168 589.3
Hepe01g0525 . 1 281 Core DNA Replication Machinery Family AT1G26840 66.0 4.0e-94 341.7
Hepe08g2041 . 5 803 Core DNA Replication Machinery Family AT1G79150 57.8 1.7e-241 832.8
Hepe02g0024 . 5 794 Core DNA Replication Machinery Family AT1G79150 57.5 5.9e-239 824.3
Hepe05g1030 . 1 939 Core DNA Replication Machinery Family AT1G44900 74.7 0.0e+00 1339.3
Hepe04g1984 . 1 575 Core DNA Replication Machinery Family AT5G46280 79.3 3.1e-263 904.4
Hepe02g0482 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.6 0.0e+00 1183.7
Hepe08g2481 . 1 737 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1099.3
Hepe07g2577 . 61 893 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1193.7
Hepe09g1860 . 62 894 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1171.4
Hepe04g2123 . 59 797 Core DNA Replication Machinery Family AT5G44635 60.4 1.2e-266 916.4
Hepe09g1857 . 18 543 Core DNA Replication Machinery Family AT5G44635 69.3 9.5e-200 694.1
Hepe09g1855 . 7 316 Core DNA Replication Machinery Family AT5G44635 71.9 5.9e-125 445.7
Hepe09g1861 . 3 270 Core DNA Replication Machinery Family AT5G44635 73.1 3.3e-112 403.3
Hepe03g1834 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1205.7
Hepe09g0663 . 40 509 Core DNA Replication Machinery Family AT2G29680 58.1 1.9e-155 546.2
Hepe09g0663 . 42 470 Core DNA Replication Machinery Family AT1G07270 58.0 4.3e-138 488.4
Hepe03g1305 . 252 844 Core DNA Replication Machinery Family AT3G25100 77.0 9.0e-258 886.3
Hepe05g0235 . 53 834 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.5
Hepe02g0733 . 16 636 Core DNA Replication Machinery Family AT2G14050 78.4 4.2e-285 977.2
Hepe08g0291 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.3 1.8e-116 416.4
Hepe01g1589 . 1 973 Core DNA Replication Machinery Family AT1G77320 51.0 2.7e-262 902.1
Hepe03g1610 . 1 192 Core DNA Replication Machinery Family AT1G80190 64.6 2.4e-69 258.8
Hepe07g0357 . 24 168 Core DNA Replication Machinery Family AT3G12530 73.8 1.8e-61 232.3
Hepe07g1096 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 8.8e-61 229.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 8.4e-69 256.9
Hepe09g1764 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 8.4e-69 256.9
Hepe08g0190 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 2.8e-51 198.7
Hepe08g1181 . 1 1539 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1745.3
Hepe10g1540 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.0 2.3e-219 758.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe06g0251 . 3 445 Core DNA Replication Machinery Family AT5G41880 64.7 5.5e-175 610.9
Hepe04g1082 . 1 1086 Core DNA Replication Machinery Family AT5G63960 79.7 0.0e+00 1779.6
Hepe05g0526 . 1 437 Core DNA Replication Machinery Family AT2G42120 74.7 7.5e-201 696.8
Hepe03g1122 . 1 449 Core DNA Replication Machinery Family AT1G67320 62.9 3.8e-177 618.2
Hepe08g0235 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.0 0.0e+00 2963.3
Hepe08g0235 . 9 2202 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2926.7
Hepe07g2561 . 13 288 Core DNA Replication Machinery Family AT5G22110 76.4 1.9e-128 456.4
Hepe07g2560 . 9 218 Core DNA Replication Machinery Family AT5G22110 56.7 1.1e-59 228.0
Hepe08g0185 . 1 925 Core DNA Replication Machinery Family AT5G22010 61.9 1.4e-305 1045.8
Hepe06g1212 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 7.2e-172 600.1
Hepe04g0589 . 1 354 Core DNA Replication Machinery Family AT5G27740 84.7 8.8e-176 613.2
Hepe02g2236 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 5.8e-154 540.8
Hepe08g2687 . 24 618 Core DNA Replication Machinery Family AT2G06510 68.1 1.0e-251 866.3
Hepe06g0960 . 34 702 Core DNA Replication Machinery Family AT2G06510 51.4 2.2e-198 689.1
Hepe09g0275 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 7.5e-244 840.1
Hepe06g0960 . 10 816 Core DNA Replication Machinery Family AT5G45400 51.9 5.3e-227 784.6
Hepe09g0275 . 1 618 Core DNA Replication Machinery Family AT5G61000 64.6 5.4e-237 817.4
Hepe06g0960 . 5 828 Core DNA Replication Machinery Family AT4G19130 52.6 1.5e-228 789.6
Hepe01g2077 . 1 267 Core DNA Replication Machinery Family AT2G24490 50.7 1.3e-70 263.5
Hepe09g1773 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.2 4.8e-189 657.5
Hepe05g1820 . 1 1112 Core DNA Replication Machinery Family AT1G08840 53.1 8.9e-301 1030.0
Hepe05g1236 . 9 171 Core DNA Replication Machinery Family AT2G25100 69.9 5.6e-61 231.5
Hepe08g0926 . 1 794 Core DNA Replication Machinery Family AT1G08130 66.7 7.9e-294 1006.5
Hepe08g0926 . 194 794 Core DNA Replication Machinery Family AT1G49250 68.4 3.8e-241 831.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44