Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1593 ATGTCGTCCCACCACCTCTTTCTCCCTCTCCTCTCAATCCTCTTCATCCTCTCTTCTTCTTCTTCTTCTTCTTCTCTCTGTCCCATAGACTTCACCTTCGTCCAAACTCTCCCATGGGACACCACCCCCTGCCGCCGCCCAAACGCCACCGCTCCCCACTGCTGTCAGACCCTTCTCAGCCTCTTAGGCATCGGCCTTGCCCAACACCTCAAAGACACCACCCATTTCCACCTCCCCAATTCCAATTCCTCTTCCTCCTGTCTCTCTTCTTTCCAATCCCATCTTTCCTCAATCTCCCTTCCTCCTCTCATCTCCAATTGCTTCCCAAACCCATCTCAATTTGTCGCCAATTCCTCCAACTGCGCTGGAATTTTCACTTCCCGCGATTTAGTTGCCAGAATTGGCTCTGCAACTCCCCTCGACGCCGCGTGCGGCGGCGACTTGACCGGATTGACCCGCTGTGGCGCCTGCGTCGACGCCGGCATGAAACTCACCTCTCGCCTCATGGGTTTAGACCCAAATGGAACTGCATGCTTCTATTTCACCATTCTTTATGCTGCTGCAATTGCTAACGAATTGGGTCCTAAAGATATCAGAGTGGCCTCTTGTATTATGGGATTGCCATTGAAGATCCCAAATGGAAACAGAGCATCCCAATTGAGCAGAAGGGCTTTAATGGCGGTGGGTTTAGGATTTACAGTCGTTTCCGTTGCATTTCTTGTTGTAATGGCGATTATGGTTTTGAGATCCAAGAAGAAACCAGCCCACGAAGAACAAGAACAGAAACTCCCCAATTTGGGGGCGAAATGGTTTACTATAACAGAGCTGGAAAAAGCCACGAATGGATTTTCTCAGAGGAATTTAATCGGGCAAGGCGCAGATGGGCTTGTTTACAAAGGGAAGATTTCAGATGGGAGTTTAGTGGCAGTGAAACAAATCATTGATTTGGATTCAGAAAGGGATGAAGATTTCACAAACGAAATCGAAATCATCAGCAAAATTAGACATAGAAATCTCCTTTCTCTTAGAGGATGTTGCATCATAAGCGACCCCAATTTCAAAACCCAAAAGAGAAGATTCTTAGTCTACGATTTCATGCCCAATGGAAATCTCAGCGATCATCTCTTCAACAAAAACAAAACCCCTCTAACATGGCCGCAGAGAAAATCCATAATTCTAGACATAGCAAGAGGATTAAACTACCTGCATTACGGAATCAAACCCGCGATTTACCACCGCGACATCAAACCCACGAACATCCTTCTAGACTCGGAATTGCAGGCCAGACTCGCGGATTTCGGGTTAGCGAAACAGAGTAAAGAAGGGCAGTCGCATTTGACGACGAGGGTCGCCGGAACTCATGGGTATTTGGCGCCGGAGTACGGGATGTACGGGCAGCTGACGGAGAAGAGCGACGTGTACAGCTTTGGGATCGTGGTTTTGGAGATGATGAGTGGGAGGAAAGTGCTGGAGAGTTGGGATTTGATAACGGATTGGGCTTGGAAGCTGGTGAAATCGGGGGATGTAGAAGCGATTTTGGAGGAAGCGATTAGAGAAGGAGGAGGGGCGAAAGGAGTAATGGAGAGATTTGTGAATGTGGGTTTGCTTTGTGCTCATGTGAATGTGGCGTTTAGACCCGCCATTGATGAAGCTTTGAAGATGTTGGAAGGGGATATTGAAATTCCACATTTACCAGATCGCCCTTTGCCATTTTCTCATCAATCCTTCAAGTTTTCTCCTTTGCAATTTCGCCCTTCTTCTTCTCCCATTTCAATACCCCACCATCCCATTGTCTAG 1797 47.75 MSSHHLFLPLLSILFILSSSSSSSSLCPIDFTFVQTLPWDTTPCRRPNATAPHCCQTLLSLLGIGLAQHLKDTTHFHLPNSNSSSSCLSSFQSHLSSISLPPLISNCFPNPSQFVANSSNCAGIFTSRDLVARIGSATPLDAACGGDLTGLTRCGACVDAGMKLTSRLMGLDPNGTACFYFTILYAAAIANELGPKDIRVASCIMGLPLKIPNGNRASQLSRRALMAVGLGFTVVSVAFLVVMAIMVLRSKKKPAHEEQEQKLPNLGAKWFTITELEKATNGFSQRNLIGQGADGLVYKGKISDGSLVAVKQIIDLDSERDEDFTNEIEIISKIRHRNLLSLRGCCIISDPNFKTQKRRFLVYDFMPNGNLSDHLFNKNKTPLTWPQRKSIILDIARGLNYLHYGIKPAIYHRDIKPTNILLDSELQARLADFGLAKQSKEGQSHLTTRVAGTHGYLAPEYGMYGQLTEKSDVYSFGIVVLEMMSGRKVLESWDLITDWAWKLVKSGDVEAILEEAIREGGGAKGVMERFVNVGLLCAHVNVAFRPAIDEALKMLEGDIEIPHLPDRPLPFSHQSFKFSPLQFRPSSSPISIPHHPIV 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81241146 81243336 + Hsped.01g15930.1 Hepe01g1593 560703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1593 598 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 366 563 - -
Hepe01g1593 598 Gene3D Transferase(Phosphotransferase) domain 1 366 561 - -
Hepe01g1593 598 FunFam Receptor-like serine/threonine-protein kinase At4g25390 248 365 - -
Hepe01g1593 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g1593 598 Pfam SPARK 22 179 IPR043891 -
Hepe01g1593 598 CDD STKc_IRAK 289 557 - -
Hepe01g1593 598 SMART serkin_6 283 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1593 598 ProSiteProfiles Protein kinase domain profile. 283 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1593 598 Gene3D Phosphorylase Kinase; domain 1 243 365 - -
Hepe01g1593 598 PANTHER OS01G0750732 PROTEIN 37 558 IPR050885 -
Hepe01g1593 598 Pfam Protein kinase domain 285 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g1593 598 SUPERFAMILY Protein kinase-like (PK-like) 260 556 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1593 Hepe-Chr1:81241146 Hepe07g0502 Hepe-Chr7:5285970 4.70e-195 dispersed
Hepe01g1593 Hepe-Chr1:81241146 Hepe07g1830 Hepe-Chr7:61087546 9.59e-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72479 PF00069 Pkinase 1.10E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1593 - - - 0.0