Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1595 ATGCCAGCTTCCCCTTCATTCCCATCTGGGTCTCGCGGCAAATGGAAGAAGAAGAAGAGGGACTCGCTAATTGGCCGCAGAAACAACTACGGCAACAACGGACATGATGATGACGATGAAGATGAAGACCTTGCCGCCGCTGAAAATGACGAAATGGAACGCGATAACATCAACAACGACGATGCTGAGGACCCTCAGATTAACTTTCACTCGATGCCCAATTCGAGTCTTCACGAGACTGAGCTCCTGTCGGATGATAAACTGCGAGTCTCTGAGTTTCCTCTGGTGGTTAAGCGGGCTGTCACTCGGCCTCACTCTTCTGTGTTGGCCGTTGTGGCAATGGAGAGGGCAAATCAGTACGGTGAAACTAAGGGGCTGCCTGGAAATTCCTTGATTTTGGAGAATGTGTCTTATGGGCAGCTCCAGGCCTTGTCTGCTATGCCTGCGGATAGTCCGGCTTTGCTGGATCAGGAGAGGGCGGAGGCTGGGAACGCGGCGGCCTATGTATTAACTCCACCGCCGATTATGGAAGGGCACGGCGTGGTTAAGAGGTTTGGGAGTAGGGTTCATGTTGTTCCTATGCACTCAGATTGGTTTTCACCCGCCACAGTGCATCGACTTGAGAGGCAAGTGGTTCCACATTTTTTCTCTGGGAAATTGCCTGACCGTACTCCTGAGAAGTATATGGAAATTCGAAATTTTGTTGTTGCCAAATACATGGAGAATCCTGAGAAAAGGGTCACTGTTTCAGACTGCCAAGGATTGGTTGAGGGTGTCAGTAATGAAGATTTAACTCGAATTGTTAGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCGACAGCTAGTTGTGAACCATGGAATAGCAGTTCATACTTGAGAGAAGATATGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCAATTGATAGCTTGATCAAATTTGACAAACCAAAATGTAGACTCAAGGTTGCTGATGTTTATTCGGCACTGTCATGCCATGATGGCAATGATGGTTTGTGTGATCTGGATAACAAAATTCGAGAGCGTCTAGCTGAAAATCATTGTAGCTCATGTTCTCGGTCTGTTCCCATTGCATACTACCAATCACAGAAGGAGGTTGATGTTTTACTTTGCTCCGACTGCTTCCATGAAGGCAAATATGTTGCTGGTCATTCAAGCATTGATTTTCTGAGGGTGGACATGGCGAAGGATTATGGTGAACTAGATGGCGAAAATTGGTCTGATCAGGAAACTCTATTGCTTTTAGAGGCAATTGAATTGTATAATGAGAATTGGAATGAAATTACAGAACATGTTGGGTCCAAGTCTAAAGCTCAATGTATTATACATTTTCTCCGTCTATCAGTGGAGGATGGTCTTCTAGAAAATGTTGATGTGCCAGGTGTTTCTCTCTCATCCAATTCTTCACATGGAGAAGATAATAAGAAGCCACATTCAAATATGAACGGAAATGTAGCAGGATCTTCCTCTCAAGATAATAAAGAGATGCATGATAGGCTCCCATTTGCTAATTCTGGGAACCCAGTCATGGCATTGGTTGCTTTTCTCGCATCTTCTATTGGACCAAGAGTTGCTGCATCATGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGTAGCTTCTTCAGGGAGCATCTTTCAAATGGAGGGTTCTGTAAATCCTAATAGGACGAATGTGGACATCACACGTGGCAGAGACGGTGGCTCCTATGGAGAACTTCCAAATTCAGTCAAGCAAAAAGATGAGAATAAGGCAGAGACAGAGGTAACCATATTATCTGCTGAAAGAGTTAAAGATGCAGCAAAAGCAGGCCTTGCTGCCGCTGCAACAAAGGCAAAATTGTTTGCGGACCATGAAGAACGAGAAATCCAACGGTTGTCTGCTAATATTATAAATCACCAGTTAAAAAGACTGGAGTTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAATGTGAACAAGTTGAGAGGACAAGACAGAGGTTCGTTGCAGAGCGAGCAAGAATGTTAGGTGTCCAATTTGGACCTGCTGGAGTTACTGCCCCAGCGAATTTACCAGGCACTATCCCTTCCATGGCAAACAACAATAGCGCAAACAATAGGCAGAATATGATCTCACCTCCTCCAACTTCACAGCCGAGCGTTTCAGGGTATAACAATAACCAACCACTTCATCCCCACATGTCCTACATGCCCCGACAACCGATGTTCGGTTTGGGGCAAAGGCTTCCCTTATCGGCAATTCAGCAGCAGCAGCAGCAGCAGCAGCCTGCGACAACTTCTAATGCCATGTTCAATGGGCCAAGCAATGCACAGCCTTCTATGAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGCTGA 2430 45.51 MPASPSFPSGSRGKWKKKKRDSLIGRRNNYGNNGHDDDDEDEDLAAAENDEMERDNINNDDAEDPQINFHSMPNSSLHETELLSDDKLRVSEFPLVVKRAVTRPHSSVLAVVAMERANQYGETKGLPGNSLILENVSYGQLQALSAMPADSPALLDQERAEAGNAAAYVLTPPPIMEGHGVVKRFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVEGVSNEDLTRIVRFLDHWGIINYCAPTASCEPWNSSSYLREDMNGEIHVPSAALKPIDSLIKFDKPKCRLKVADVYSALSCHDGNDGLCDLDNKIRERLAENHCSSCSRSVPIAYYQSQKEVDVLLCSDCFHEGKYVAGHSSIDFLRVDMAKDYGELDGENWSDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSSHGEDNKKPHSNMNGNVAGSSSQDNKEMHDRLPFANSGNPVMALVAFLASSIGPRVAASCAHASLAALSEDSVASSGSIFQMEGSVNPNRTNVDITRGRDGGSYGELPNSVKQKDENKAETEVTILSAERVKDAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTAPANLPGTIPSMANNNSANNRQNMISPPPTSQPSVSGYNNNQPLHPHMSYMPRQPMFGLGQRLPLSAIQQQQQQQQPATTSNAMFNGPSNAQPSMSHPMMRPVTGSSSGLG 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81252381 81259096 - Hsped.01g15950.1 Hepe01g1595 560705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1595 809 SUPERFAMILY Homeodomain-like 415 464 IPR009057 -
Hepe01g1595 809 ProSiteProfiles SANT domain profile. 413 464 IPR017884 -
Hepe01g1595 809 MobiDBLite consensus disorder prediction 570 596 - -
Hepe01g1595 809 FunFam SWI/SNF complex subunit SMARCC2 isoform c 196 284 - -
Hepe01g1595 809 FunFam SWI/SNF complex subunit SMARCC2 isoform C 414 464 - -
Hepe01g1595 809 ProSiteProfiles Myb-like domain profile. 417 460 IPR001005 -
Hepe01g1595 809 Pfam SWIRM domain 200 279 IPR007526 GO:0005515(InterPro)
Hepe01g1595 809 Pfam Myb-like DNA-binding domain 416 458 IPR001005 -
Hepe01g1595 809 CDD SANT 417 459 IPR001005 -
Hepe01g1595 809 MobiDBLite consensus disorder prediction 711 745 - -
Hepe01g1595 809 MobiDBLite consensus disorder prediction 35 50 - -
Hepe01g1595 809 MobiDBLite consensus disorder prediction 711 746 - -
Hepe01g1595 809 SUPERFAMILY Homeodomain-like 189 288 IPR009057 -
Hepe01g1595 809 Gene3D - 414 464 - -
Hepe01g1595 809 Coils Coil 630 650 - -
Hepe01g1595 809 Pfam SWIRM-associated region 1 617 687 IPR032451 -
Hepe01g1595 809 SMART sant 414 462 IPR001005 -
Hepe01g1595 809 MobiDBLite consensus disorder prediction 1 50 - -
Hepe01g1595 809 ProSiteProfiles SWIRM domain profile. 190 288 IPR007526 GO:0005515(InterPro)
Hepe01g1595 809 MobiDBLite consensus disorder prediction 476 509 - -
Hepe01g1595 809 Gene3D - 196 283 IPR036388 -
Hepe01g1595 809 PANTHER SWI/SNF COMPLEX-RELATED 209 726 - -
Hepe01g1595 809 MobiDBLite consensus disorder prediction 765 809 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1595 K11649 - - csv:101220514 1394.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1595 Hepe-Chr1:81252381 Hepe02g0516 Hepe-Chr2:5157351 1.36e-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37