Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1609 ATGGCTGGTGAATATAGGTTCGCAATGGATCAAAAGGACATTGCGAGGTTATTGGTTACCACCATTGATGATTTCACCCGAGGTCGTTTGATCAATAAAGAGCAGAGAAACCTTCACAAAGAGCAGTGTGCTGAGAGATTGGCAGCTGAAGATGGAAGCAATGGCAAAGATACAGAGGTTAGGTACTCTGATCAAGCAGTGCTGGCGAATTTGGATTGGGGTATTGAAGCCCTTGAGGAAGCTCTGAACACATCCAATTTAGAAACTAAGCTTGCAAGACTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCGTTGTTGAACTCTAACGAGAAAACTGCTGGAGTTCCCAATTTCTACCTTTCTGCTTGGGCTCACCTAAATCTTTCATATCTCTGGAAATTGCGAGGAAATGTTCACAACTCAGTCCTCCATGTTCTTGAGATGTTTATTGTGGATCCCTTCTTTTCACGCATTGATTTTGCTCCTGAACTCTGGAAAGAACTCTTTCTTCCACACATGAGCTCAATCGTGGGGTGGTATTCAGAGGAGAGGCACAGGCTTGTGATTGAGGTGATTCCTGATTCTTCTGATTTGTCCTTCACAGCTGATTTAGATCAATTCTTCAACGAATCTTTGGTATTTTCGCTGAGGCCTGATCAAGTGGAGAAATTACAGAAGTTGGAGCAGCTTTATGGAGAATTTTTGGACGATAATACGAGGCTATTTGCTAAATACTTCAAGGATTGTATGAATTCTGATTCAAGCTCTATCAAGAAGGTTTCCCCGATGTTGCCAATCGCGGAGCCACCTATGACTCCTCTTCATGAAGTGAGCCGCTCAATTCCCGATTACGTAAAGTTTGGACCTATTTTACCCAAGAGTGCTGGGTTTTCGTCCATCTTACCAAAATCTAAAGATGGTGCAACAGAAGCAAGCAGGTCAAAGGGGACTTCCAGTCCAGCCAACAACACGGAGAAATTTGCAGGGTGGCATGCTCAGACTGATTCTCTGGAGGATAATGAGGATGATTCTGATCATGAACCTTGCGATTCTTACGATCTCAGTGATACTGCAACTCATAAGTTACTATCGCCTAGTAGCTCCAGGACGTCGGAGGATGAGCATATAGGACCTAAAGGAGAGATGTCGAAAATGGGGAGTCGCAAACATTCTCCCACCATTTTTTCTCCAATTGAATCTCCTTCAATCCCTTCACCGAAAGTTTTATCTCCAACAGCTAATGAGAAATGTAAAAGTGAATCTCGTTCTACATTGCGACTGTTATCTAGCCGCTTCGGCGATCAACGTGTTGCTACCTCTGTCCCCGAATCACCAGTTACAAGAAGCGATTACAGCTTCAGTTCTGTAGAGTCTGATGGTGAAGACTTGAAGAAAAACCGCCAGAGGAGAAATTATAGGCAAACGCACAATGCAACCTATGACAACGTGAGTATCCAAGACATCGAGAATTGTTCAATAGATGAACTTGTGGAGGAAAGCAGAAGTCGGTCGTCTGAGAATCTGACACATACAGTACGACCCCCTAAAGATTTCGTATGCCCCATCACAGGTCAGATTTTCAGTGATCCTGTTACTCTCGAAACTGGGCAAACTTATGAAAGAAAAGCGATTCAGGAGTGGTTGAAAAGAGGAAATACAACTTGCCCCATTACGCGGCAGCCATTGTCTTCATCTGTAATGCCTAAAACGAACTATGTCTTGAAAAGACTGATAACATCTTGGCAAGAACAGCATCCTGATCTTGCTCAGGATTTTTCGTGGACTGGTACACCAGTAAGTACTGTCAGTTCTACCTTAAAAAACACGAGCTCTCTGGCATCCACTCCTTGCCGACCATTTCATGTTCCTCTTAACAATACGCACGAGTCACTTAGCCAAAAAGGCAAAAGATTAATGCAAGGAGCAGTGTCTTCATCGCCGACCAGTGTAATATCTCAAGCCACGGTCGAGAAAATCATTAACAATTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTTGAAAGCTTGAAACAACGTGAGACAGCTGTGCTCGCTATAGCAAGATTCTGGAAGGACTCAAGAGGTGATCCAGCAGTTCATGCTTATTTATCTGAATTGGCTGTTGTGAACGGCTTTGTGGAAATACTGTTAAATTCCCGGGAAAGAGATGTCCTCAGAACGTCGATTTACATTCTTTCTGAGCTTATTTGTGCAGATGAAAGTGTTGGAGAGTCCCTCAGTAGTCTTGATTCTGATTTTGAGTGCCTAGCTTCTTTACTGACTAGTGGGTTGGCAGAGGCTTCTGTTCTTATGTGCCTGCTAAGGCCTACATTTACTCAGTTGTCAGCTCATGACCTTATACCTTCCCTAGTCCAGCTGCTCCAGAAGAAAAGTGAAGATTTTGATGATCTTCCGTTTGTAATAGAGCCAAAAGATGCGGCTATCGCAATGCTTGAACATATTTTTATGGGAGGGGATGAAAATAGCCAGTCCCGGAATGCTGAGAGTCTTACCTCTGCTGAAGGGATCCCTGCATTGGTCAAGTTTCTGGATGTGGTAGAAGTGAGGAGGTCAATACTTTCCATACTTTTATGTTGTATGCGGGTTGACAACGGTTGCAAGGACTTGATAGGAGGGGAGATTGAGCTTGCTCCAGTTCTTGAGTTATTTCATGCTGGAAAAGATGACGCTAGAGGCCTGTGTGTGGCTTTTCTATCAGAGCTGGTTCAGATGAACAGAAGGACACAATGCAATCAAATTTTGCAGACAATTAAAGATGAAGGAGCATTCAGTACGATGCATACACTTCTTACACATCTTCAAACGGCTCCAATTGAGCAACAACCGGGCATTGCTTCTCTTCTTCTCCAGCTGGATCTCCTGGTTGAACCACGAAAAATGAGCATCTACCGAGAAGAATCTATGGACGCATTGTTTGAAGCTTTTCGAAGAAAGGACAACTATAATTCTCAAACTGCAGCTGTAGATGCTTTATTATATCTGTCTGGGAGATTGACTTCCTCAGGAAAGTCCTATACAAAAGCGTGGTTGCTCAAACTTGCAGGATTTGATCAACCTTACAATGCTTTGTTGAAGGCCGAGGGACTGAGGAAGTCTGACAGCCAATTATCTGAGACAGCGGAGGAAGAGAAGGCAGTCAGCGTATGGGAAAGAAGGGTAGCACTTGTTCTTTGTAACCATGAAAAGGGGTACATTTTTAAAGTTCTGAAGGAATGCCTAAAGAGTAAATCATTAGAGATGGCAAAGTCATGTCTTGTCATTGTTTCATGGCTCTGCCACATGCTTTCGACGCTCCCCGATACCGGGGTACGAGAGACTGCTCGTAGCTCCTTGCTTGATGAACTTGTAAACGTTCTCCAATTTTCTAATAGCCTGGAGGAGAAGATTTTGGCATGCCTTGCTTTGAAAACTTTCATTAGTGATCCAGCTGCACTTGAGGAACTGGGACTTTATGCAGGATCCATCAACAAAACGTTGACAAAACTTAGGAGAAGCTCATTTGTGGTCAATGATATAATGAAAGCCTTGATGAACTTGCCATCTGTTGACGCAACAGAGCTCTGGAGTTACACTGAAGTTGGTGCACTAGATTCCAGCTCAAATGGAGAGGTTTTGTCTCTGGTTCATCTGAATGGGCGGGTGTTAAGCAGTCACTCGGATGGAACCATTAAGGTTTGGGATGCTGGAAATAAGGTTTTAAGGTTGATCCAAGAAGCTCGGAAACACACAAAAGCTGTAACATGCCTTTGTGTTTCCTCTTCCGGAGACGAATTATACAGTGGTTCCTTAGACAAAACAATTCGGGTATGGGCCATCAAATCTGAAGAAATACAGTGCGTTCAAGTTCATGAAGTGAAGGAGCCGGTCTATGACTTAAAAGCCAATGCCGACGTTGCATGCTTTGTTTCACAAGCAACTGGAGTCAAGGTGTTCAACTACTCTGGCGTTCCAAAGCATATAAATTTCAACAAATACGTCAAGTGCCTGGCATTATCAGAAGATAAACTCTACTGCGGTACCTCTGGTGACTGTATACTGGAGGTGAATTTGTCAAAAAAAACCACAAGCACATTCTATGCTGGAGTAAGAAAATTGCTATGTAAACAAAACATTTACTCCCTACACATCCACGGGGACCTAATGTTTGCTGGCGGTTCGGCAGTGGATGGAACAGCCGGAAAGACATTTTCGCAGTCCAACAAGACAACACTGGGAACATTTTCAACTGGAGTTGACATCCATCACATGGCAGTAGGCACAGACTTCTTGTTTACAGCCTCCAGATTAGGGATAATAGAGGTATGGTCGAAAGAAAAGTACACAAAAATTTCTTCAGTTAAATTAGGTAGTGCTAGTGGTAGCAACACAAAGATTACGTCCCTAACTACAGTTGATGGTGGTGGATTGCTCCTTGTTGGTACCTCTGATGGAAAGATACAGGTTTTGGCTTTGGAATGA 4482 43.35 MAGEYRFAMDQKDIARLLVTTIDDFTRGRLINKEQRNLHKEQCAERLAAEDGSNGKDTEVRYSDQAVLANLDWGIEALEEALNTSNLETKLARLDHAEKMLQVCALLNSNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVHNSVLHVLEMFIVDPFFSRIDFAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSSDLSFTADLDQFFNESLVFSLRPDQVEKLQKLEQLYGEFLDDNTRLFAKYFKDCMNSDSSSIKKVSPMLPIAEPPMTPLHEVSRSIPDYVKFGPILPKSAGFSSILPKSKDGATEASRSKGTSSPANNTEKFAGWHAQTDSLEDNEDDSDHEPCDSYDLSDTATHKLLSPSSSRTSEDEHIGPKGEMSKMGSRKHSPTIFSPIESPSIPSPKVLSPTANEKCKSESRSTLRLLSSRFGDQRVATSVPESPVTRSDYSFSSVESDGEDLKKNRQRRNYRQTHNATYDNVSIQDIENCSIDELVEESRSRSSENLTHTVRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSSVMPKTNYVLKRLITSWQEQHPDLAQDFSWTGTPVSTVSSTLKNTSSLASTPCRPFHVPLNNTHESLSQKGKRLMQGAVSSSPTSVISQATVEKIINNLKPFVSCLCNFESLKQRETAVLAIARFWKDSRGDPAVHAYLSELAVVNGFVEILLNSRERDVLRTSIYILSELICADESVGESLSSLDSDFECLASLLTSGLAEASVLMCLLRPTFTQLSAHDLIPSLVQLLQKKSEDFDDLPFVIEPKDAAIAMLEHIFMGGDENSQSRNAESLTSAEGIPALVKFLDVVEVRRSILSILLCCMRVDNGCKDLIGGEIELAPVLELFHAGKDDARGLCVAFLSELVQMNRRTQCNQILQTIKDEGAFSTMHTLLTHLQTAPIEQQPGIASLLLQLDLLVEPRKMSIYREESMDALFEAFRRKDNYNSQTAAVDALLYLSGRLTSSGKSYTKAWLLKLAGFDQPYNALLKAEGLRKSDSQLSETAEEEKAVSVWERRVALVLCNHEKGYIFKVLKECLKSKSLEMAKSCLVIVSWLCHMLSTLPDTGVRETARSSLLDELVNVLQFSNSLEEKILACLALKTFISDPAALEELGLYAGSINKTLTKLRRSSFVVNDIMKALMNLPSVDATELWSYTEVGALDSSSNGEVLSLVHLNGRVLSSHSDGTIKVWDAGNKVLRLIQEARKHTKAVTCLCVSSSGDELYSGSLDKTIRVWAIKSEEIQCVQVHEVKEPVYDLKANADVACFVSQATGVKVFNYSGVPKHINFNKYVKCLALSEDKLYCGTSGDCILEVNLSKKTTSTFYAGVRKLLCKQNIYSLHIHGDLMFAGGSAVDGTAGKTFSQSNKTTLGTFSTGVDIHHMAVGTDFLFTASRLGIIEVWSKEKYTKISSVKLGSASGSNTKITSLTTVDGGGLLLVGTSDGKIQVLALE 1493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81363005 81369425 + Hsped.01g16090.1 Hepe01g1609 560719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1609 1493 Pfam U-box domain 516 586 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1609 1493 MobiDBLite consensus disorder prediction 373 387 - -
Hepe01g1609 1493 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1490 IPR052858 -
Hepe01g1609 1493 CDD RING-Ubox_PUB 516 568 IPR045210 -
Hepe01g1609 1493 MobiDBLite consensus disorder prediction 312 331 - -
Hepe01g1609 1493 SUPERFAMILY WD40 repeat-like 1220 1490 IPR036322 GO:0005515(InterPro)
Hepe01g1609 1493 MobiDBLite consensus disorder prediction 299 423 - -
Hepe01g1609 1493 MobiDBLite consensus disorder prediction 436 455 - -
Hepe01g1609 1493 ProSiteProfiles Trp-Asp (WD) repeats profile. 1247 1288 IPR001680 GO:0005515(InterPro)
Hepe01g1609 1493 SUPERFAMILY RING/U-box 507 587 - -
Hepe01g1609 1493 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1609 1493 Pfam WD domain, G-beta repeat 1209 1235 IPR001680 GO:0005515(InterPro)
Hepe01g1609 1493 Pfam WD domain, G-beta repeat 1247 1278 IPR001680 GO:0005515(InterPro)
Hepe01g1609 1493 Gene3D - 1199 1489 IPR015943 GO:0005515(InterPro)
Hepe01g1609 1493 MobiDBLite consensus disorder prediction 390 423 - -
Hepe01g1609 1493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1247 1284 - -
Hepe01g1609 1493 SMART Ubox_2 518 582 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1609 1493 MobiDBLite consensus disorder prediction 358 372 - -
Hepe01g1609 1493 Gene3D - 645 959 IPR011989 -
Hepe01g1609 1493 MobiDBLite consensus disorder prediction 436 478 - -
Hepe01g1609 1493 SMART WD40_4 1240 1279 IPR001680 GO:0005515(InterPro)
Hepe01g1609 1493 SMART WD40_4 1452 1491 IPR001680 GO:0005515(InterPro)
Hepe01g1609 1493 SMART WD40_4 1197 1235 IPR001680 GO:0005515(InterPro)
Hepe01g1609 1493 SMART WD40_4 1408 1444 IPR001680 GO:0005515(InterPro)
Hepe01g1609 1493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 589 IPR013083 -
Hepe01g1609 1493 SUPERFAMILY ARM repeat 786 1159 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1609 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1609 Hepe-Chr1:81363005 Hepe09g0778 Hepe-Chr9:7498162 9.62e-205 dispersed
Hepe01g1609 Hepe-Chr1:81363005 Hepe07g2239 Hepe-Chr7:66798880 1.22e-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39