Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1631 ATGGCCTGTGTGGAAGAGAAGCTCAAGACAACAACAACAACAGGGGGTTTGATTAATAACACCCCCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACTGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCATGCTTGTGCCGGTCCGCTTGTTTCCTTACCCCATGTGGGAAGTCTTGTTTACTACTTCCCGCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCCAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCTGATAAAGAATCAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTTAACTCTGAAAAAGATGTCTTCCTAGTTCCAGACTTTGGACTTAGGCCGAGTAAACATCCAAACGAGTTCTTCTGCAAAACTTTGACTGCTAGTGACACCAGCACACATGGTGGGTTTTCAGTTCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGACTACACAATGCAACCACCAACTCAGGAGCTCGTTGTCCGAGACTTGCATGACAATACCTGGACTTTTCGCCACATTTATCGCGGACAGCCAAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTTGTTGGGGCAAAGAGGCTTAGAGCAGGTGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGCTGCTCATCGGAGTAAGGCGTGCTAACCGGCAACAGACAACGTTGCCATCTTCTGTTTTATCTGCTGATAGTATGCATATTGGGGTTCTTGCTGCTGCAGCTCATGCTACTGCTAATCGGAGTCCATTCACAATCTTCTACAACCCCAGGGCATGTCCGTCAGAGTTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTCTACGGAACTCAGCTTTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGTCGATATATGGGGACAATTGTTGGAGTTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCGAAGTGGCGAAATCTTCAGGTGGAGTGGGATGAGCCAGGGTGCTGCGACAAGCAAAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCTTCACTGACTTCGGGTCTAAAACGTCCAATGCACGGTGGATTTTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCCGAAAATGTTCGAGGGGATTTTTCATACGGAGCGCCAACTTTATGCTCCGAGCCACTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTGCACGGAGCCACCTTACAGCAGGATTCAGTTAACAATTTTGTTAAGTTTCAGGACATGAAGAGCATGCAGGCGGTAACCAATCCCAAAATGCAGCAGTTTACATCGTCAGAAAATGGATCTATGCAGAATCAAAATCATCATCAAACAGCACCTACACCATCTGATCACATCAACAACTCAAATTCATCACCAAAAGCAAATCTACCCGGAAAAGTTCACCCTTCGACGACCATTGAAAGTGAAACTCCAACTGGAGCTGATGTAGACAAGGCAAGATATGAACGTGATCCCTCAACCAATCAGACTAATCCGCTGTCCCCTGTCGGAGACTGTGGGGAGGAAAAACTCACTAGTAACGATGTGAATATGCAGACACTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGAACCCCATGCAGTTTCAATCCGTATCATGGCCGATGCAGCCTCAGCTGGAATCACTAATCCAACACCCACAACCAATTGACATGCCTCGGCCTGAATTTACCAACTCAAATGGTTTGATTTCATCTCTGGATGGCGATGGATGTTTGATTAACCCATCCTGTCTCCCCCTTGCTGGAGTAATTAGATCACCTGGGAATTTCTCTATGTTGGGACTGCAAGACTCCTCAACAGTCTTTCATGAGGCTCTTAACTTTCCCTTACCTTCCACAGGCCAAGACATGTGGGATCCTCATAATAATATGAGGTTCTCATCTCAAGCCAATCATCTCGTCTCGTTCTCTCATCCAGACGCATCTAACCTAAACTGTATGGCTAATGCAAATGTTATGAGAGATGTTTCGGATGAGAGCAACAACCAAAGCGGGATATACAGTTGTTCTAACCTTGAAATCAGCAACGGTGGAAGTACTTTGGTTGATCCTGCTGTTTCAAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGTTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTCTTGGGGATTCTCAGGCTTTCTCCAGGCAAGAATTCCATGATAATTCAGGTGGTACATCCTCCTGCAATGTGGATTTTGATGAGGGTAATCTTCTGCAGAACGGCTCATGGAAGCAAGTTGTACCGCCCATGAGAACTTATACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCCATTGATGTCACTAGTTTTAAGAACTACGATGAATTATGCTCTGCTATCGAATGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTCCTGCTTATTGGTGACGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGTATCAGAATCTTGTCACCCTCAGAAGTCCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCCATATCAGATGGTGGCCGATCTTAA 2868 45.43 MACVEEKLKTTTTTGGLINNTPPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKESDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHATANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGVSDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPMHGGFLGETDWGSLVKRPMLRVPENVRGDFSYGAPTLCSEPLMKMLLRPQMVNLHGATLQQDSVNNFVKFQDMKSMQAVTNPKMQQFTSSENGSMQNQNHHQTAPTPSDHINNSNSSPKANLPGKVHPSTTIESETPTGADVDKARYERDPSTNQTNPLSPVGDCGEEKLTSNDVNMQTLVNQLSFVNQNQNPMQFQSVSWPMQPQLESLIQHPQPIDMPRPEFTNSNGLISSLDGDGCLINPSCLPLAGVIRSPGNFSMLGLQDSSTVFHEALNFPLPSTGQDMWDPHNNMRFSSQANHLVSFSHPDASNLNCMANANVMRDVSDESNNQSGIYSCSNLEISNGGSTLVDPAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGNLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSISDGGRS 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81546522 81552020 + Hsped.01g16310.1 Hepe01g1631 560741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1631 955 SUPERFAMILY CAD & PB1 domains 839 920 - -
Hepe01g1631 955 FunFam Auxin response factor 317 389 - -
Hepe01g1631 955 FunFam Auxin response factor 151 255 - -
Hepe01g1631 955 Pfam Auxin response factor 279 362 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe01g1631 955 SUPERFAMILY DNA-binding pseudobarrel domain 140 282 IPR015300 -
Hepe01g1631 955 ProSiteProfiles PB1 domain profile. 841 925 IPR053793 -
Hepe01g1631 955 Pfam AUX/IAA family 841 929 IPR033389 -
Hepe01g1631 955 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677(InterPro)
Hepe01g1631 955 FunFam Auxin response factor 837 930 - -
Hepe01g1631 955 Gene3D - 317 389 - -
Hepe01g1631 955 Gene3D - 838 930 - -
Hepe01g1631 955 SMART B3_2 153 255 IPR003340 GO:0003677(InterPro)
Hepe01g1631 955 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 933 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe01g1631 955 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677(InterPro)
Hepe01g1631 955 CDD B3_DNA 152 253 IPR003340 GO:0003677(InterPro)
Hepe01g1631 955 Gene3D - 151 254 IPR015300 -
Hepe01g1631 955 MobiDBLite consensus disorder prediction 488 538 - -
Hepe01g1631 955 MobiDBLite consensus disorder prediction 488 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1631 Hepe-Chr1:81546522 Hepe08g2709 Hepe-Chr8:69072305 1.14e-191 dispersed
Hepe01g1631 Hepe-Chr1:81546522 Hepe07g1742 Hepe-Chr7:59763079 3.52e-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54845 PF02362 B3 8.20E-21 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1631 K14486 - csv:101216825 1760.35