Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1643 ATGAAGATTCAGTGCGACGTCTGCAGCAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGACGCCGCCCTCTGCTCCGCCTGCGACCACCGCGTCCACCACGCCAACATCCTCGCCTCTAAGCACCTCCGTTTCCCCCTCCTCCACCCCACCAACGACCATTTCCCCCTCTGCGATATCTGCCAGGAGAGACGAGCCTACTTGTTCTGCCTGCAGGACCGGGCGATTCTGTGCAGAGACTGCGATCTTCCAATCCATTCGGTGAATGAGCTTACTCAGAAGCACGATCGGTTCCTTCTTACTGGCGTTAAGCTTTCTTGTGTTTCCGCCATGAATGTACCGTCGTCGTCTTCCTCTGAAGCGTTTAATTCTGAACCTAATTCACAGCCTCTGTTTCAGAACATTGCTAATGCTTCTTCTTCTGCCCCTGCCGAGAGTTCGACTTCCAACGCGCCAATGGCGGCTGCCTCTGCCGACGGTTGTGAGCCGATGAACAGTGTGTCGGATTATTTGATTGAGGCGCTTCCTGATTGGCATTTTGAAGAGTTTCTTGATTCTTCCTCTGCTGCTGCTGGTCCTCATTTTGGTTTCTGTAAGCTGCAGAGCAATGATGTCGATGGTGATTGGGTTTTTCCATTTGTTGATGCTGTAGTGGAATTAGAAACGAGCTCAGATTCTCACTCGTCGGAAAATTGGGAATTTTGGAGTCCTGAAGCGGCTGCCGTTCCTCTGTTTTGTTCAGAAATAAGTTGTGAGATTGAGATGGAGAAGAGGAAGGGAGGTAGAAACGAGAAAGCCAGAGGGGAAGGTGGCGGTGGCGGTGGCGGTGGGTGGAGCCGGGGAGACGACGGGATTACAGTGCCGGAAGTTCGTCTCTGGCCGAGAAGATTCAGATCGTCTTGA 903 52.82 MKIQCDVCSKDEALLFCTADDAALCSACDHRVHHANILASKHLRFPLLHPTNDHFPLCDICQERRAYLFCLQDRAILCRDCDLPIHSVNELTQKHDRFLLTGVKLSCVSAMNVPSSSSSEAFNSEPNSQPLFQNIANASSSAPAESSTSNAPMAAASADGCEPMNSVSDYLIEALPDWHFEEFLDSSSAAAGPHFGFCKLQSNDVDGDWVFPFVDAVVELETSSDSHSSENWEFWSPEAAAVPLFCSEISCEIEMEKRKGGRNEKARGEGGGGGGGGWSRGDDGITVPEVRLWPRRFRSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81637092 81638196 - Hsped.01g16430.1 Hepe01g1643 560753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1643 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe01g1643 300 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Hepe01g1643 300 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Hepe01g1643 300 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe01g1643 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 232 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Hepe01g1643 300 CDD Bbox1_BBX-like 5 47 IPR049808 -
Hepe01g1643 300 CDD Bbox1_BBX-like 57 100 IPR049808 -
Hepe01g1643 300 Gene3D Classic Zinc Finger 1 95 - -
Hepe01g1643 300 FunFam B-box zinc finger protein 21 1 98 - -
Hepe01g1643 300 MobiDBLite consensus disorder prediction 258 286 - -
Hepe01g1643 300 Pfam B-box zinc finger 57 96 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1643 Hepe-Chr1:81637092 Hepe02g0478 Hepe-Chr2:4666861 6.17e-59 dispersed
Hepe03g1068 Hepe-Chr3:60426425 Hepe01g1643 Hepe-Chr1:81637092 1.65e-34 transposed
Hepe07g0738 Hepe-Chr7:8820933 Hepe01g1643 Hepe-Chr1:81637092 1.89e-19 transposed
Hepe07g0957 Hepe-Chr7:12812874 Hepe01g1643 Hepe-Chr1:81637092 1.88e-36 transposed
Hepe01g1643 Hepe-Chr1:81637092 Hepe10g0125 Hepe-Chr10:1269043 6.37e-67 wgd
Hepe01g1643 Hepe-Chr1:81637092 Hepe08g0983 Hepe-Chr8:9285986 1.08e-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54846 PF00643 zf-B_box 6.40E-07 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1643 - - - 0.0