Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1645 ATGGCTCGAGGGAAGATCCAGATCAAGAGAATAGAAAACCCAACGAACAGGCAGGTCACCTACTCCAAGAGACGAAATGGACTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTTTCAAGCACCGGCAAACTCCATGAATACATCAGCCCTTCCACTCAGACCAAGGAGCTGTTCGATCAGTATCAGAAGACTTTAGGCCTGGATCTATGGATCTCTCACTATGAGAGAATGCAAGATAATCTGAAGAAGCTGAAAGATGTGAATCGAAATCTGCGGAGGCAGATTAGGCAGAGGATGGGAGAATGTATGAATGATCTGAGTTATGAAGAACTTCGCTGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTATCGGGTGATATCAAACCAGATTGAAACGCACAAGAAAAAGTTAAAAAGCGTAGGAGAAATACACAAGAGTCTTCTCCAGGAGTTTGACATTGCAACAGAGGAAGATCCACATTATGGGTTGGTAGACAACGGAGGAGTAGGAGGAGATTATGATTCAATAATGGGTTTCTCAGGCGGTGGGTCTCGCATATTTGCACTTCGTCTCCAGCCCAACCACCCTAATATTCACCACCATGCCCCTCCTTCAGATCTCACTACTTATCCACTCCTCGAGTAG 696 45.26 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTQTKELFDQYQKTLGLDLWISHYERMQDNLKKLKDVNRNLRRQIRQRMGECMNDLSYEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGGDYDSIMGFSGGGSRIFALRLQPNHPNIHHHAPPSDLTTYPLLE 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81654311 81656650 - Hsped.01g16450.1 Hepe01g1645 560755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1645 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 FunFam MADS-box transcription factor 16 13 97 - -
Hepe01g1645 231 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe01g1645 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe01g1645 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 Gene3D - 13 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe01g1645 231 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe01g1645 231 Pfam K-box region 82 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe01g1645 231 Coils Coil 84 111 - -
Hepe01g1645 231 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1587 Hepe-Chr1:81072728 Hepe01g1645 Hepe-Chr1:81654311 1.52e-41 dispersed
Hepe01g1645 Hepe-Chr1:81654311 Hepe03g0477 Hepe-Chr3:7313329 6.19e-29 dispersed
Hepe01g1645 Hepe-Chr1:81654311 Hepe08g0613 Hepe-Chr8:5370745 7.10e-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54847 PF01486 K-box 1.40E-21 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1645 K09264 - csv:101218008 416.001