Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g1645 | ATGGCTCGAGGGAAGATCCAGATCAAGAGAATAGAAAACCCAACGAACAGGCAGGTCACCTACTCCAAGAGACGAAATGGACTCTTCAAAAAGGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTTTCAAGCACCGGCAAACTCCATGAATACATCAGCCCTTCCACTCAGACCAAGGAGCTGTTCGATCAGTATCAGAAGACTTTAGGCCTGGATCTATGGATCTCTCACTATGAGAGAATGCAAGATAATCTGAAGAAGCTGAAAGATGTGAATCGAAATCTGCGGAGGCAGATTAGGCAGAGGATGGGAGAATGTATGAATGATCTGAGTTATGAAGAACTTCGCTGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGCAAGTATCGGGTGATATCAAACCAGATTGAAACGCACAAGAAAAAGTTAAAAAGCGTAGGAGAAATACACAAGAGTCTTCTCCAGGAGTTTGACATTGCAACAGAGGAAGATCCACATTATGGGTTGGTAGACAACGGAGGAGTAGGAGGAGATTATGATTCAATAATGGGTTTCTCAGGCGGTGGGTCTCGCATATTTGCACTTCGTCTCCAGCCCAACCACCCTAATATTCACCACCATGCCCCTCCTTCAGATCTCACTACTTATCCACTCCTCGAGTAG | 696 | 45.26 | MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTQTKELFDQYQKTLGLDLWISHYERMQDNLKKLKDVNRNLRRQIRQRMGECMNDLSYEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGGDYDSIMGFSGGGSRIFALRLQPNHPNIHHHAPPSDLTTYPLLE | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 81654311 | 81656650 | - | Hsped.01g16450.1 | Hepe01g1645 | 560755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g1645 | 231 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | FunFam | MADS-box transcription factor 16 | 13 | 97 | - | - | |
Hepe01g1645 | 231 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Hepe01g1645 | 231 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 165 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe01g1645 | 231 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | Gene3D | - | 13 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe01g1645 | 231 | ProSiteProfiles | K-box domain profile. | 84 | 174 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Hepe01g1645 | 231 | Pfam | K-box region | 82 | 168 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Hepe01g1645 | 231 | Coils | Coil | 84 | 111 | - | - | |
Hepe01g1645 | 231 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g1587 | Hepe-Chr1:81072728 | Hepe01g1645 | Hepe-Chr1:81654311 | 1.52e-41 | dispersed | |
Hepe01g1645 | Hepe-Chr1:81654311 | Hepe03g0477 | Hepe-Chr3:7313329 | 6.19e-29 | dispersed | |
Hepe01g1645 | Hepe-Chr1:81654311 | Hepe08g0613 | Hepe-Chr8:5370745 | 7.10e-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54847 | PF01486 | K-box | 1.40E-21 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g1645 | K09264 | - | csv:101218008 | 416.001 |