Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1648 ATGGAAAGAAAGCAAAGAAACGTCGCTCAAGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCGGACAACGCTTCTTGCACCTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTTGCCGAAATTCGCGAGCCCAATCGTGGTGCCCGTCTTTGGCTCGGTACCTTCGACACCGCCCACGAAGCTGCCGTCGCCTATGACGCTGCTGCTCGTAAGCTCTATGGCTCCGACGCCAAGCTCAACCTCCCTCAAACCGCAACCGAGATGCCTCCCAACAATAATAATACTAATATTGCTTCTCCTCCGACCGCTACGACGTCGTCGTCTCCGGTGGGGGAGTTGCACCCAATTGGAGGGCTGTGGGGGAATGAGAATGTGAATTTTGATGAGTCCATATGGAGGGAGGCGGTCATGTCTTTGGATTTTCCTATTATTCAAGATGATCAACAGTTTTTCTTCGATGGAGCCGGCAATTGGGAATCTTTGCAGTGGTGCATGTGA 513 53.8 MERKQRNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAAVAYDAAARKLYGSDAKLNLPQTATEMPPNNNNTNIASPPTATTSSSPVGELHPIGGLWGNENVNFDESIWREAVMSLDFPIIQDDQQFFFDGAGNWESLQWCM 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81698670 81699513 - Hsped.01g16480.1 Hepe01g1648 560758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1648 170 SMART rav1_2 30 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1648 170 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 2 114 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Hepe01g1648 170 Pfam AP2 domain 31 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1648 170 CDD AP2 29 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1648 170 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1648 170 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1648 170 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1648 170 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677(InterPro)
Hepe01g1648 170 MobiDBLite consensus disorder prediction 1 28 - -
Hepe01g1648 170 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1648 170 FunFam Ethylene-responsive transcription factor 2 29 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1648 Hepe-Chr1:81698670 Hepe02g3302 Hepe-Chr2:82612079 2.36e-35 dispersed
Hepe01g1648 Hepe-Chr1:81698670 Hepe10g0599 Hepe-Chr10:7330413 2.17e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54849 PF00847 AP2 2.20E-14 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1648 - - - 0.0