Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1672 ATGACTCTGAGAGGGATGATTCGCGAGCAGATTGAAATACGAGAAGGCAGTGGGAATTCATCGAGAAAAGTAAGGGAAGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAGCAGCCTTCTTCTTCTTCTTCTTCTCCGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTTCCTCCGGAGCTTCTTTTGGACATAATTGAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGCCGGAATGTTGTTGCCTGTGGTTCAGTTTGCAGGTCATGGCGGATGGTTACGAAGGAAGTTGTGAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGATACCTCAATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATCTAAGTAAACTGTTGCTAACCGCAAAAAGAATACGACGAGCATTAAGGACGGACTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGACCCAAAATTGCAAACCAGTAGATCAAAACGAAGAATCCCTTTGAAACAGGTTTCTCCGAGTAAATCTCCAATGAACTATAAAGTCGCTGCCGTAGCTTTTGAGCTCAACGTCCTCCGCACCAGAGGTCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCTGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTTAACGACTGCATCAATGAGCATCATTCATCTACATCGATTGGCAAAGGAAAGAAGCCGATAACCGAGTCCCCCGAGCCTCAGGAATCGATAGCTCCATTGGTATTGAAGAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTGAATTTCAAAGGGCGTGTCACAGTTGCTTCGGTGAAGAACTTCCAGCTGGTCGCCGCAGCAGAGACGAGTCAAAATGTGTCTGCAGCCGAACAGGAAAAAGTGATTCTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTATCAGCTTTCCAAGCGTTTGCAATTTGCCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1227 47.43 MTLRGMIREQIEIREGSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSSSPVPIEQSRWANFPPELLLDIIERVEASETSWPSRRNVVACGSVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTSIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRALRTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDPKLQTSRSKRRIPLKQVSPSKSPMNYKVAAVAFELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFNDCINEHHSSTSIGKGKKPITESPEPQESIAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81900023 81902947 + Hsped.01g16720.1 Hepe01g1672 560782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1672 408 MobiDBLite consensus disorder prediction 291 310 - -
Hepe01g1672 408 PRINTS Tubby superfamily signature 318 335 IPR000007 -
Hepe01g1672 408 PRINTS Tubby superfamily signature 365 384 IPR000007 -
Hepe01g1672 408 PRINTS Tubby superfamily signature 336 352 IPR000007 -
Hepe01g1672 408 PRINTS Tubby superfamily signature 386 408 IPR000007 -
Hepe01g1672 408 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Hepe01g1672 408 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Hepe01g1672 408 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Hepe01g1672 408 Gene3D Tubby Protein; Chain A 116 408 IPR025659 -
Hepe01g1672 408 MobiDBLite consensus disorder prediction 39 53 - -
Hepe01g1672 408 ProSitePatterns Tub family signature 2. 393 408 IPR018066 -
Hepe01g1672 408 ProSitePatterns Tub family signature 1. 336 349 IPR018066 -
Hepe01g1672 408 PANTHER TUBBY-RELATED 22 407 - -
Hepe01g1672 408 Pfam Tub family 119 403 IPR000007 -
Hepe01g1672 408 SUPERFAMILY Tubby C-terminal domain-like 107 408 IPR025659 -
Hepe01g1672 408 CDD F-box_AtTLP-like 58 102 - -
Hepe01g1672 408 MobiDBLite consensus disorder prediction 34 53 - -
Hepe01g1672 408 SUPERFAMILY F-box domain 54 127 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1672 Hepe-Chr1:81900023 Hepe07g0731 Hepe-Chr7:8734820 5.01e-179 dispersed
Hepe01g1672 Hepe-Chr1:81900023 Hepe04g1521 Hepe-Chr4:70741379 3.99e-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54851 PF01167 Tub 3.60E-104 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1672 K19600 - csv:101222500 739.954