Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1686 ATGGCTATAGCTCGGCTTGCTCGCCAAGCGAAGCGTTCGTATGGGTTTTGCGCGAAGTTGACAGCAGTGGTTATTTTAGGCCTTTGTTTCATCGTCATTTGGTCTATTTTTGCTTCTCCTTCCACGTCCGTGACGATTCAGAGGGAAAGTTTCGACAACATTCGTGTGCCCGTAACAGGAAACACGGAAGTAAGCAATCCTGGAGCTCAAATTGATCACAGGAAGAAAGTAGATGAGGGAAAATTGAGCAGAGATACGAAAGATAGAGTGAAATCCGATCTAGATGGAAAGGATATGAAAAATGTTAACGGGTCTAATTCTAAGTCTCCCAGTAACCATGCATCTGAAAAGAAGCATGGAGCAACGAAAGAGAAAAATGAGAAACATAAAGAAAATAAATCAGAGGTTGCAAAAAAAGAGAATCAAGGATCTGAGGAATCTGAGGATGAAGATGCACAAAAGGGAAATGAGGAGGAAGAACAGGAAGTGATAGATGGTCAAGAAGCAGAGCTAAAGGATGATGAAGCTGAAACAGAAGGTGATCTGGGTGAGTCAGATCAGGAACCTGAGGAGAGGATTGAGCCAAAAGATAAAGGGAAAAACGTCAAGACAAAAGGTCCATTGTTTGATCCAAATGCTCATTATAGTTGGAAAGTATGCCGAGCAAGAAGTAAATACAATTACATTCCTTGTATTGACATTGAAGCTGGAGTGGCAAAACAGCAGGGCTATCGGCATAGGGAAAGGATTTGCCCTAGAGCACCTCCAATGTGCCTTGTGCCTCTTCCTCCCAATGGATACGGCCCCCCAGTGCACTGGCCAGAGAGCAATTCGAAGATACTTTACAAAAATGTGGCGCATCCAAAACTTGCTGCATTCATCAAGAAACATAATTGGTTGGTGGAAGTTGGAGAGTTCCTTACATTTCCTCAGAATCATTCTGAGCTCAATGGTGGAGTTATTCACTATCTCGAGTCCATTGAAGAGATGGTACCCGATATTGAGTGGGGCAAGAATATTCACGTGGTTCTAGAAATTGGATGCACATATGCAAGTTTAGGGGCTTTTCTTCTTGAAAAGGATGTTATAACATTGTCATTGGGCTTGAAGGATGACCTTGTGGACTTGGCTCAAGTTGCACTGGAGCGAGGATTTCCTACTGTGGTTAGTCCTTTTGGGAGTAGAAGACTTCCTTTCCCTAGTGGTGTTTTTGATGCCGTTCATTGTGGGGGATGCAGCAGAATTTGGCATTCCAATGACGGGAAGCTTCTTCTAGAAATGAATAGGATTTTAAGACCTGGCGGATACTTCATCTTGTCCACTAAACATGACAGCATTGAAGAAGAAGAAGCAATGAGTTCATTGACAGCCTCAATTTGTTGGAACATTCTGGCACATAAAACTGATGAAGTCAGTGACGTGGGTGTTAAGATATATCAGAAGCCTGAATCAAACGATATATTTCAGCTGAGGAGAAGGAAAAATCCACCTCTATGCAAGGAAAACGAAAACCCTGATGCTGCCTGGTACGTGCCTATGAGAACCTGCTTACACACCATTCCAACTTCTATTGAACAGCGCGGAGCAGAATGGCCTGAAGAATGGCCGAAGAGACTTGAAACTTTTCCCGAGTGGTTGAGCAATGAGAAAGAAAAGTTAATTGCAGACACTAATCACTGGAAAGCAATTGTTGAGAAGTCATATCTCACTGGAATAGGTATTGACTGGTCAAGTGTGCGAAATGTGATGGACATGAAAGCCATTTATGGGGGGTTTGCTGCTGCTCTCTCGCAGCAGAAGGTTTGGGTGATGAATGTGATCCCGGTCCATGCACCAGATACACTTCCGATAATTTACGAACGCGGTCTGGTTGGCATCTACCATGACTGGTGTGAGTCTTTTGGTACATATCCACGATCATACGACCTTCTGCACGCGGATCATTTGTTCTCAAGGCTTAAGAACAGGTGCAAGGAGCCTGTATCGATTGTGGTTGAGATGGATCGTATATTACGACCTGGAGGTTGGGCGATTATACGGGAGAAGCTGGCAATTCTGAATCCATTGGAAGGGATACTCAAGAGTCTGCAATGGGAGATTCGGATGAGTTATTCTCATGGAGACGAGGGAATCCTATGTGCACAGAAGACCATGTGGCGGCCTTAA 2166 44.0 MAIARLARQAKRSYGFCAKLTAVVILGLCFIVIWSIFASPSTSVTIQRESFDNIRVPVTGNTEVSNPGAQIDHRKKVDEGKLSRDTKDRVKSDLDGKDMKNVNGSNSKSPSNHASEKKHGATKEKNEKHKENKSEVAKKENQGSEESEDEDAQKGNEEEEQEVIDGQEAELKDDEAETEGDLGESDQEPEERIEPKDKGKNVKTKGPLFDPNAHYSWKVCRARSKYNYIPCIDIEAGVAKQQGYRHRERICPRAPPMCLVPLPPNGYGPPVHWPESNSKILYKNVAHPKLAAFIKKHNWLVEVGEFLTFPQNHSELNGGVIHYLESIEEMVPDIEWGKNIHVVLEIGCTYASLGAFLLEKDVITLSLGLKDDLVDLAQVALERGFPTVVSPFGSRRLPFPSGVFDAVHCGGCSRIWHSNDGKLLLEMNRILRPGGYFILSTKHDSIEEEEAMSSLTASICWNILAHKTDEVSDVGVKIYQKPESNDIFQLRRRKNPPLCKENENPDAAWYVPMRTCLHTIPTSIEQRGAEWPEEWPKRLETFPEWLSNEKEKLIADTNHWKAIVEKSYLTGIGIDWSSVRNVMDMKAIYGGFAAALSQQKVWVMNVIPVHAPDTLPIIYERGLVGIYHDWCESFGTYPRSYDLLHADHLFSRLKNRCKEPVSIVVEMDRILRPGGWAIIREKLAILNPLEGILKSLQWEIRMSYSHGDEGILCAQKTMWRP 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 81983851 81989287 + Hsped.01g16860.1 Hepe01g1686 560796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1686 721 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 20 719 IPR004159 GO:0005737(PANTHER)|GO:0005768(PANTHER)|GO:0005802(PANTHER)|GO:0008168(InterPro)
Hepe01g1686 721 MobiDBLite consensus disorder prediction 112 149 - -
Hepe01g1686 721 Coils Coil 157 177 - -
Hepe01g1686 721 MobiDBLite consensus disorder prediction 58 208 - -
Hepe01g1686 721 Gene3D Vaccinia Virus protein VP39 318 494 IPR029063 -
Hepe01g1686 721 MobiDBLite consensus disorder prediction 69 98 - -
Hepe01g1686 721 CDD AdoMet_MTases 343 440 - -
Hepe01g1686 721 MobiDBLite consensus disorder prediction 150 188 - -
Hepe01g1686 721 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 227 716 IPR004159 GO:0008168(InterPro)
Hepe01g1686 721 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 514 681 IPR029063 -
Hepe01g1686 721 MobiDBLite consensus disorder prediction 189 204 - -
Hepe01g1686 721 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 253 451 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1686 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1686 Hepe-Chr1:81983851 Hepe04g1089 Hepe-Chr4:65568904 3.49e-190 dispersed
Hepe01g1686 Hepe-Chr1:81983851 Hepe01g0769 Hepe-Chr1:71195591 2.41e-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 35