Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1698 ATGGTTGATTTGGAAAATTCTTCGCCGGTTGCGGTTTCTGGAGATGCTGGTTTATCTTCTTCAGGTTATACTGAACCAATGACGGTGGTGGCTCCGCCGAAGAAGAAACGGAACCTTCCTGGAATGCCAGATCCGGCAGCGGAGGTGATTGCTTTGTCGCCAGAGAGTTTACTGGCAACGAACCGGTTCGTGTGCGAGATCTGCAACAAAGGTTTCCAGCGGGACCAGAACCTGCAACTTCACCGTCGAGGTCACAACCTTCCGTGGAAGCTCCGGCAGCGGACGAGCAATGAGGTGCGTAAGCGCGTCTATGTCTGCCCGGAGCCTTCTTGCGTCCACCATAATCCGGCGAGAGCGCTCGGCGATCTCACCGGAATAAAGAAACACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTATTGACGGAGGAAAGTGCTCGTGCTCAAACCCTAGCAGTAGTTCCAAAATCTGAAGCAAAGGAATCAGCCGTGGCTTCGCCTCCTCCGCCGCCGCTTACTCCGTCAACCACCGTGGTTTCTCCGGCGTTGTCAATTCACAGCTCAGAGCTAGCTGATAATCCGGTTAGACTCCCATCGGTATCAACGCCTGCAGCCGCGACATGCTTGACCTCCGCGGCTGTCAATAGTACCACAAATGCAAATAGCTCAAACGATTTGTTTGGAAATAGTACTGTTTTTGCCCCTTCTGCGTCAATTTCAGCCACGAACCAAATATCCCCAACATTACCACCACCCAATTTACCCACTTCAATACTACCCTACGATTGCCCTTCTGTTTCCACCGTTAATCCCACATCTCTTTCTCTCTCCACATCTCTCTATCTTTCCACTAAAGGATCCTCCCTCTTTGCCCCACCTGACCAAGACCGTCTGCAGTACACGTGGCCCACCCAACCGGCGGCCATGTCCGCCACTGCCTTGCTGCAGAAGGCAGCGGAAATGGGGGCGACGGCGTCTAACCCGTCGTTGTTTCGAGGCTTTGGGATGGCTACTACTTCTTCTTCAGGTCAAGATAGCTCTGCCACTACTCAATGGAGTAGGAATGTGAACCGAGATAATCACCGGAATAATGCCGGATTAACGAATGGTTTAGGGCTTGAACTTCCCTCCGGACCGGGCGGTTCTGGTTTGATGATGGCAGGTGGTCCGTTTTGCTCGTTTGGAAGTCAGCCCATGACGAGGGATCTTCTTGGCCTTGGCTTAGGCGGCGGTGGGGCCTCTGCTAGTAGATTTTCGGCTTTGATCGCTTCCATGGGCGGTGGGTCTGGTAATTACGACGTTGCATCTTCAGTCGCCTGCGGCGGAAGTGGCGATGGAAGCTCCTCTGGCGACGCTTGGGGTCGAGATGAACAAGATGGGGAACATTGA 1536 52.47 MVDLENSSPVAVSGDAGLSSSGYTEPMTVVAPPKKKRNLPGMPDPAAEVIALSPESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLTEESARAQTLAVVPKSEAKESAVASPPPPPLTPSTTVVSPALSIHSSELADNPVRLPSVSTPAAATCLTSAAVNSTTNANSSNDLFGNSTVFAPSASISATNQISPTLPPPNLPTSILPYDCPSVSTVNPTSLSLSTSLYLSTKGSSLFAPPDQDRLQYTWPTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATTSSSGQDSSATTQWSRNVNRDNHRNNAGLTNGLGLELPSGPGGSGLMMAGGPFCSFGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGNYDVASSVACGGSGDGSSSGDAWGRDEQDGEH 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82072650 82076785 + Hsped.01g16980.1 Hepe01g1698 560808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1698 511 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Hepe01g1698 511 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Hepe01g1698 511 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 201 - -
Hepe01g1698 511 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Hepe01g1698 511 MobiDBLite consensus disorder prediction 487 511 - -
Hepe01g1698 511 Gene3D Classic Zinc Finger 118 197 - -
Hepe01g1698 511 MobiDBLite consensus disorder prediction 1 39 - -
Hepe01g1698 511 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Hepe01g1698 511 MobiDBLite consensus disorder prediction 207 227 - -
Hepe01g1698 511 Pfam Zinc-finger of C2H2 type 63 85 IPR013087 -
Hepe01g1698 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 457 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe01g1698 511 FunFam protein indeterminate-domain 12-like 42 110 - -
Hepe01g1698 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Hepe01g1698 511 Gene3D Classic Zinc Finger 63 105 - -
Hepe01g1698 511 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
Hepe01g1698 511 MobiDBLite consensus disorder prediction 12 26 - -
Hepe01g1698 511 SMART c2h2final6 139 159 IPR013087 -
Hepe01g1698 511 SMART c2h2final6 63 85 IPR013087 -
Hepe01g1698 511 SMART c2h2final6 104 134 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1698 Hepe-Chr1:82072650 Hepe04g1495 Hepe-Chr4:70566490 6.68e-125 dispersed
Hepe07g2331 Hepe-Chr7:67662460 Hepe01g1698 Hepe-Chr1:82072650 3.09e-69 transposed
Hepe01g1698 Hepe-Chr1:82072650 Hepe10g0659 Hepe-Chr10:8737679 1.96e-127 wgd
Hepe01g1698 Hepe-Chr1:82072650 Hepe04g1493 Hepe-Chr4:70556596 2.05e-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54852 PF12874 zf-met 0.0037 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1698 K25869 - mdm:114826446 516.153