Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1720 ATGTTTCTGAGTTCCAACGCCCCTGTGATGAACACGTCATCTTCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCGTCGTCCGCGCCGCCCAAGCCACGGACCTCAACAACCACCACGGATTCTGGTTGCAGTACTGCCAAAAGTGATTTGAGCAATGAAAATGGTCTCTTCCGCTTAGGGTTTGAAGTGGCAGATCATGTCGGTCTTCCTCCTCGACATCACCAAGCTCGTAATGTACTCCACGGTCGTCGCGACTTTAAAAGAAGCGGCGGCGGAGTCGGCTGTGGAGTAAGGAGAAGCGTTCGTGCTCCCAGAATGAGATGGACTACAACTCTACATGCTCATTTTATACATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTCAAAAGCCATTTGCAGATGTACCGAACAGTGAAGAACACTGTGAAGGGAACAGATGATTGTGGAAGGCCTGAGGTTGAAGCAGAAGCTGTTTTATCTTCTTCTTCTTCGTCTGTTCATAAATCTAACTTTGAATCTCCTCATTGCCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAATAACGAAATGGCCAAGTCAAACGGCGACGCTTTCGCTAAATCAAGAGGAATAAAGGTTGAAGGAACCAAGAGAGGTTATCACGAAGCTCTCAGCATGCAGCGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGCTGATGCACATGACCTTGCCCTTCTCAATTGCTAA 822 46.59 MFLSSNAPVMNTSSSLPDLSLQISLPSSAPPKPRTSTTTTDSGCSTAKSDLSNENGLFRLGFEVADHVGLPPRHHQARNVLHGRRDFKRSGGGVGCGVRRSVRAPRMRWTTTLHAHFIHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRPEVEAEAVLSSSSSSVHKSNFESPHCQRIQRSSLVTSMHKNNEMAKSNGDAFAKSRGIKVEGTKRGYHEALSMQRINLEFTLGRPSWQLDYADAHDLALLNC 273
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 82393847 82396510 - Hsped.01g17200.1 Hepe01g1720 560830
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1720 273 Gene3D - 104 161 - -
Hepe01g1720 273 FunFam Myb family transcription factor 103 161 - -
Hepe01g1720 273 SUPERFAMILY Homeodomain-like 102 159 IPR009057 -
Hepe01g1720 273 MobiDBLite consensus disorder prediction 1 48 - -
Hepe01g1720 273 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 158 IPR006447 GO:0003677(InterPro)
Hepe01g1720 273 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 261 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Hepe01g1720 273 Pfam Myb-like DNA-binding domain 106 157 IPR001005 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1720 Hepe-Chr1:82393847 Hepe06g0993 Hepe-Chr6:57694093 4.88e-33 dispersed
Hepe01g1720 Hepe-Chr1:82393847 Hepe10g0690 Hepe-Chr10:9119845 5.40e-46 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54853 PF00249 Myb_DNA-binding 9.00E-06 CL0123 Hepe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1720 - - - 0.0