Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1724 ATGAAGGGTTTGGGGTGCTGTTTGTTCATCTCTCTTCTTCTCTCTTCGTTTTCATTTTTCTCTTCGGCCCTTTCCGACGCCGAAGCTTCGTTCATCGCTCGCCGCCAGCTTCTGACCTTTCACGAGAACGATGATTTGCCCGACGATTTCCAATCCAAAATCGTGGTCACCGAGTCATTTTCCAATCTCAGGCTCCGCTGTGCTTTCATCGCCCTTCAAGCCTGGAAGCTCGCCATTTATTCCGACCCTTTAAACACCACCGCCAATTGGGTCGGCAGCGATGTATGTTCCTACACTGGAGTTTTCTGCGCCCCTGCTCTCGACGATCCCAATCTCGAAGTCGTCGCCGGAATCGACATCAACGACGCCGACATCGCCGGGTACCTGCCCCTCGAGCTCGGTCTGCTGACCGACATAGCTTTATTTCACATCAGCAGTAACCGATTCTGCGGGATTGTCCCGGCGAGCTTCTCGAAATTGACTCTGCTTCACGAGTTCGACATTAGCAACAATCGATTTGTTGGGTATTTCCCGGAAGTTGTTTTGAGAATCCCCAATTTGAAATATTTGGACATTAGATACAATGAATTCGAAGGTGAATTGCCTCCTGCGCTTTTCACTCAGGATTTCGACGCGATTTTCATAAACAACAACAGATTCACCTCGTTCATTCCGGAGAGTTTTGGAGAGTCGCCGGCGTCGGTGATCGTGATTGCGAACAACAATTTCACAGGGTGTATTCCGAGCAGCATTGGGAAGATGGGGAACACGTTGAAGCAGCTCGTGATGTTGAACAATGGGTTAATAGGTTGTCTGCCTGATGAGATTGGGTTGCTTGGAAATGCGAATGTGCTCGATGTTTCATCCAATCAATTGAGTGGGATCTTGCCTAAGAGCTTTGATGCGTTGAACAATGTTGAGATTATGGATATTTCTTCTAATTTGTTGACTGGAGTTGTTCTTGATGGTTTGTGTAATTTGCCCAAATTGGCCAATTTTACATTTTCTTTCAATTACTTCAATGGAGAGTCAGATCAGTGCGTGCCGCAGAATAGGAAGGATGTTTTGTTGAATGATTCTTACAATTGCTTGCCGGGGAGGGCTAATCAGAAGCCGGCTGATATTTGTGGTATGGTGATTAATAAGAGCGTTGACTGCAAGTCTAAGTGCGGTGGAGGATCTCCCTCGCCGTCGAAGCCACAATCCTCACCGTTGCCGGAGCCTGAGGCACCAGCACCAGCACCCTTTGATGATTCTTTTGATCAATCACCAGTCCCAAGACACCGCCCTCCTCCCCCACCTGTTTCATCACCTCCACCACCGGTTTACTCTCCACCACCACCAGTTTCCTCACCCCCACCACCGGTCCACTCTCCACCACCACCAGTTTCCTCACCCCCACCCCCAGTCCACTCTCCACCGCCACCAGTTTCCTCACCCCCACCACCGGTCCACTCTCCACCCCCACCAGTTTCCTCTCCTCCACCCCCAGTTCATTCTCCACCCCCACCAGTTTCCTCTCCTCCACCCCCAGTTCATTCTCCACCGCCACCAGTTTCCTCACCTCCCCCACCGGTTCACTCTCCACCACCACCGGTCCACTCTCCCCCACCTCCAGTTCACTCTCCCCCACCACCGGTTCAATCTCCACCACCTCCAGTCCATTCTCCACCACCACCGGTTTCCTCACCACCACCCCCAGTTCACTCTCCCCCACCCCCAGTTCACTCTCCACCACCACCGGTTCACTCACCACCACCACCGGTTCACTCTCCACCACCACCGGTCTACTCGCCTCCTCCTCCAGTACATTCACCACCACCTCCGGTATTCTCTCCACCGCCACCTTCTCCATCTCCTCCTCCTCCTCCGGTCGCACTTCCGCCACCTCCACCAGAAGACATAATGCTTCCACCAATTGTGGGCTTCCAGTACTCATCACCGCCTCCGCCACTATTTCCAGGCTACTAA 1971 52.41 MKGLGCCLFISLLLSSFSFFSSALSDAEASFIARRQLLTFHENDDLPDDFQSKIVVTESFSNLRLRCAFIALQAWKLAIYSDPLNTTANWVGSDVCSYTGVFCAPALDDPNLEVVAGIDINDADIAGYLPLELGLLTDIALFHISSNRFCGIVPASFSKLTLLHEFDISNNRFVGYFPEVVLRIPNLKYLDIRYNEFEGELPPALFTQDFDAIFINNNRFTSFIPESFGESPASVIVIANNNFTGCIPSSIGKMGNTLKQLVMLNNGLIGCLPDEIGLLGNANVLDVSSNQLSGILPKSFDALNNVEIMDISSNLLTGVVLDGLCNLPKLANFTFSFNYFNGESDQCVPQNRKDVLLNDSYNCLPGRANQKPADICGMVINKSVDCKSKCGGGSPSPSKPQSSPLPEPEAPAPAPFDDSFDQSPVPRHRPPPPPVSSPPPPVYSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVFSPPPPSPSPPPPPVALPPPPPEDIMLPPIVGFQYSSPPPPLFPGY 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82427178 82429148 + Hsped.01g17240.1 Hepe01g1724 560834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1724 656 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 568 IPR051582 -
Hepe01g1724 656 Pfam Leucine rich repeat 283 338 IPR001611 GO:0005515(InterPro)
Hepe01g1724 656 FunFam Leucine-rich repeat extensin-like protein 1 69 230 - -
Hepe01g1724 656 Gene3D Ribonuclease Inhibitor 70 364 IPR032675 -
Hepe01g1724 656 MobiDBLite consensus disorder prediction 399 413 - -
Hepe01g1724 656 MobiDBLite consensus disorder prediction 388 656 - -
Hepe01g1724 656 MobiDBLite consensus disorder prediction 425 656 - -
Hepe01g1724 656 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Hepe01g1724 656 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515(InterPro)
Hepe01g1724 656 SUPERFAMILY L domain-like 76 363 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 388 409 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 448 473 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 429 446 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 411 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1724 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1724 Hepe-Chr1:82427178 Hepe03g0572 Hepe-Chr3:11211999 1.03e-70 dispersed
Hepe01g1724 Hepe-Chr1:82427178 Hepe09g0745 Hepe-Chr9:7134047 3.21e-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0745 . 56 228 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 5.1e-43 173.3
Hepe02g0129 . 55 381 Leucine-rich Repeat extension Gene Families AT1G62440 57.2 7.2e-37 152.9
Hepe08g2577 . 64 233 Leucine-rich Repeat extension Gene Families AT1G62440 65.9 3.6e-36 150.6
Hepe09g0745 . 16 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.0 1.3e-67 255.0
Hepe08g2577 . 30 415 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.1e-63 241.9
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT4G13340 69.3 1.5e-39 161.8
Hepe03g0572 . 20 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.3 2.2e-38 157.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT4G13340 60.6 8.2e-38 156.0
Hepe05g1580 . 44 371 Leucine-rich Repeat extension Gene Families AT4G13340 65.3 2.0e-36 151.4
Hepe09g0745 . 19 410 Leucine-rich Repeat extension Gene Families AT3G24480 70.7 3.3e-72 269.6
Hepe08g2577 . 26 411 Leucine-rich Repeat extension Gene Families AT3G24480 71.1 7.2e-67 251.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 2.2e-39 160.6
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT3G24480 64.1 3.7e-39 159.8
Hepe03g0572 . 24 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.8e-39 159.5
Hepe05g1580 . 40 370 Leucine-rich Repeat extension Gene Families AT3G22800 68.4 8.1e-52 201.8
Hepe02g0129 . 54 381 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 8.1e-44 175.3
Hepe09g0745 . 68 396 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 1.3e-38 157.9
Hepe09g0745 . 42 400 Leucine-rich Repeat extension Gene Families AT5G25550 61.5 1.0e-40 164.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92