Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1724 ATGAAGGGTTTGGGGTGCTGTTTGTTCATCTCTCTTCTTCTCTCTTCGTTTTCATTTTTCTCTTCGGCCCTTTCCGACGCCGAAGCTTCGTTCATCGCTCGCCGCCAGCTTCTGACCTTTCACGAGAACGATGATTTGCCCGACGATTTCCAATCCAAAATCGTGGTCACCGAGTCATTTTCCAATCTCAGGCTCCGCTGTGCTTTCATCGCCCTTCAAGCCTGGAAGCTCGCCATTTATTCCGACCCTTTAAACACCACCGCCAATTGGGTCGGCAGCGATGTATGTTCCTACACTGGAGTTTTCTGCGCCCCTGCTCTCGACGATCCCAATCTCGAAGTCGTCGCCGGAATCGACATCAACGACGCCGACATCGCCGGGTACCTGCCCCTCGAGCTCGGTCTGCTGACCGACATAGCTTTATTTCACATCAGCAGTAACCGATTCTGCGGGATTGTCCCGGCGAGCTTCTCGAAATTGACTCTGCTTCACGAGTTCGACATTAGCAACAATCGATTTGTTGGGTATTTCCCGGAAGTTGTTTTGAGAATCCCCAATTTGAAATATTTGGACATTAGATACAATGAATTCGAAGGTGAATTGCCTCCTGCGCTTTTCACTCAGGATTTCGACGCGATTTTCATAAACAACAACAGATTCACCTCGTTCATTCCGGAGAGTTTTGGAGAGTCGCCGGCGTCGGTGATCGTGATTGCGAACAACAATTTCACAGGGTGTATTCCGAGCAGCATTGGGAAGATGGGGAACACGTTGAAGCAGCTCGTGATGTTGAACAATGGGTTAATAGGTTGTCTGCCTGATGAGATTGGGTTGCTTGGAAATGCGAATGTGCTCGATGTTTCATCCAATCAATTGAGTGGGATCTTGCCTAAGAGCTTTGATGCGTTGAACAATGTTGAGATTATGGATATTTCTTCTAATTTGTTGACTGGAGTTGTTCTTGATGGTTTGTGTAATTTGCCCAAATTGGCCAATTTTACATTTTCTTTCAATTACTTCAATGGAGAGTCAGATCAGTGCGTGCCGCAGAATAGGAAGGATGTTTTGTTGAATGATTCTTACAATTGCTTGCCGGGGAGGGCTAATCAGAAGCCGGCTGATATTTGTGGTATGGTGATTAATAAGAGCGTTGACTGCAAGTCTAAGTGCGGTGGAGGATCTCCCTCGCCGTCGAAGCCACAATCCTCACCGTTGCCGGAGCCTGAGGCACCAGCACCAGCACCCTTTGATGATTCTTTTGATCAATCACCAGTCCCAAGACACCGCCCTCCTCCCCCACCTGTTTCATCACCTCCACCACCGGTTTACTCTCCACCACCACCAGTTTCCTCACCCCCACCACCGGTCCACTCTCCACCACCACCAGTTTCCTCACCCCCACCCCCAGTCCACTCTCCACCGCCACCAGTTTCCTCACCCCCACCACCGGTCCACTCTCCACCCCCACCAGTTTCCTCTCCTCCACCCCCAGTTCATTCTCCACCCCCACCAGTTTCCTCTCCTCCACCCCCAGTTCATTCTCCACCGCCACCAGTTTCCTCACCTCCCCCACCGGTTCACTCTCCACCACCACCGGTCCACTCTCCCCCACCTCCAGTTCACTCTCCCCCACCACCGGTTCAATCTCCACCACCTCCAGTCCATTCTCCACCACCACCGGTTTCCTCACCACCACCCCCAGTTCACTCTCCCCCACCCCCAGTTCACTCTCCACCACCACCGGTTCACTCACCACCACCACCGGTTCACTCTCCACCACCACCGGTCTACTCGCCTCCTCCTCCAGTACATTCACCACCACCTCCGGTATTCTCTCCACCGCCACCTTCTCCATCTCCTCCTCCTCCTCCGGTCGCACTTCCGCCACCTCCACCAGAAGACATAATGCTTCCACCAATTGTGGGCTTCCAGTACTCATCACCGCCTCCGCCACTATTTCCAGGCTACTAA 1971 52.41 MKGLGCCLFISLLLSSFSFFSSALSDAEASFIARRQLLTFHENDDLPDDFQSKIVVTESFSNLRLRCAFIALQAWKLAIYSDPLNTTANWVGSDVCSYTGVFCAPALDDPNLEVVAGIDINDADIAGYLPLELGLLTDIALFHISSNRFCGIVPASFSKLTLLHEFDISNNRFVGYFPEVVLRIPNLKYLDIRYNEFEGELPPALFTQDFDAIFINNNRFTSFIPESFGESPASVIVIANNNFTGCIPSSIGKMGNTLKQLVMLNNGLIGCLPDEIGLLGNANVLDVSSNQLSGILPKSFDALNNVEIMDISSNLLTGVVLDGLCNLPKLANFTFSFNYFNGESDQCVPQNRKDVLLNDSYNCLPGRANQKPADICGMVINKSVDCKSKCGGGSPSPSKPQSSPLPEPEAPAPAPFDDSFDQSPVPRHRPPPPPVSSPPPPVYSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVFSPPPPSPSPPPPPVALPPPPPEDIMLPPIVGFQYSSPPPPLFPGY 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82427178 82429148 + Hsped.01g17240.1 Hepe01g1724 560834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1724 656 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 568 IPR051582 -
Hepe01g1724 656 Pfam Leucine rich repeat 283 338 IPR001611 GO:0005515(InterPro)
Hepe01g1724 656 FunFam Leucine-rich repeat extensin-like protein 1 69 230 - -
Hepe01g1724 656 Gene3D Ribonuclease Inhibitor 70 364 IPR032675 -
Hepe01g1724 656 MobiDBLite consensus disorder prediction 399 413 - -
Hepe01g1724 656 MobiDBLite consensus disorder prediction 388 656 - -
Hepe01g1724 656 MobiDBLite consensus disorder prediction 425 656 - -
Hepe01g1724 656 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Hepe01g1724 656 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515(InterPro)
Hepe01g1724 656 SUPERFAMILY L domain-like 76 363 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 388 409 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 448 473 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 429 446 - -
Hepe01g1724 656 PRINTS Proline rich extensin signature 411 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1724 Hepe-Chr1:82427178 Hepe03g0572 Hepe-Chr3:11211999 1.03e-70 dispersed
Hepe01g1724 Hepe-Chr1:82427178 Hepe09g0745 Hepe-Chr9:7134047 3.21e-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1724 - - - 0.0