Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1741 ATGCAAACCACTGATTCGCAGCCGCAGGACTCGAATCAACGGCACCAACAGCCGCAGTCGTGGATACCAATGCAGTACCCTCCCACGGCCATGGTAATGCCGCACCATATGTTGACGCCACAGCATTACATGGCGCCGCCGCTTCCGCCGCCCTATATGCATTACCACCACCAATATCAACCTCATCTTCTCCCTCTTCAGCATTCGCAGCCACTACAGGGATCTGGCGCCGCCGAAAACAAGACCATTTGGGTTGGTGACTTGCATCATTGGATGGATGAGGCTTTCCTCCATAACTGCTTTTCTTCCATCGGCGAGATTTCATCTATCAAGGTCATTCGTAATAAGCAAACTGGTTTGTCTGAGGGGTATGGATTTGTAGAATATTTTGCTCATGCATCAGCTGAGAAAGCTCTCCAGAACTATTCTGGAGTGATAATGCCAAATACAGAGCAGGCTTTCCGCCTGAATTGGGCGACATTTAGTGCCAGTGACAAGCGATCAGATAATGATCCTGATCTTTCTATTTTTGTTGGAGACTTAGCTGCAGATGTTACTGATACTTTGCTGTACGAAACATTTTCTAGTAAATTTCCCTCTGTTAAAGCAGCAAAAGTTGTCATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTACGATTCGGAGATGACAATGAAAGATCTCAGGCCATGGCTGAAATGAATGGTACATATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACGCCCAGAAAGTCTTCTGGATATCAGCAACAACATTCTTCACAAGGAGGATATTCAATAAATGGTGGCTCTTTTAGCCAAGGTCTCCAATCTGAAGGAGATTCTGGAAATACAACTATATTTGTTGGAGGTCTTGATCCTAGTGTCACCGACGAAGATCTGAAGCAACCTTTCTTGCAGTATGGTGAGATAGCCTCTGTTAAAATACCAGTCGGTAAAGGATGTGGGTTTGTCCAATTTTCCAACAGAAATGATGCTGAAGAGGCTTTGCAGAAACTAAATGGATCTATAATTGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAACCCAGCAAATAAGCAGGCAAATTACCCTTCTCTCCTATTGTGA 1125 45.07 MQTTDSQPQDSNQRHQQPQSWIPMQYPPTAMVMPHHMLTPQHYMAPPLPPPYMHYHHQYQPHLLPLQHSQPLQGSGAAENKTIWVGDLHHWMDEAFLHNCFSSIGEISSIKVIRNKQTGLSEGYGFVEYFAHASAEKALQNYSGVIMPNTEQAFRLNWATFSASDKRSDNDPDLSIFVGDLAADVTDTLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMAEMNGTYCSSRPMRIGAATPRKSSGYQQQHSSQGGYSINGGSFSQGLQSEGDSGNTTIFVGGLDPSVTDEDLKQPFLQYGEIASVKIPVGKGCGFVQFSNRNDAEEALQKLNGSIIGKQTVRLSWGRNPANKQANYPSLLL 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82571237 82575545 - Hsped.01g17410.1 Hepe01g1741 560851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1741 374 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 58 362 IPR050825 GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005829(PANTHER)
Hepe01g1741 374 MobiDBLite consensus disorder prediction 1 21 - -
Hepe01g1741 374 SUPERFAMILY RNA-binding domain, RBD 171 363 IPR035979 GO:0003676(InterPro)
Hepe01g1741 374 SUPERFAMILY RNA-binding domain, RBD 55 148 IPR035979 GO:0003676(InterPro)
Hepe01g1741 374 Gene3D - 80 160 IPR012677 -
Hepe01g1741 374 SMART rrm1_1 290 357 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 SMART rrm1_1 175 249 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 SMART rrm1_1 82 157 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 Gene3D - 275 369 IPR012677 -
Hepe01g1741 374 FunFam Polyadenylate-binding protein RBP47B 80 160 - -
Hepe01g1741 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 161 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 MobiDBLite consensus disorder prediction 254 283 - -
Hepe01g1741 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 MobiDBLite consensus disorder prediction 251 283 - -
Hepe01g1741 374 CDD RRM1_SECp43_like 82 162 - -
Hepe01g1741 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 361 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 FunFam polyadenylate-binding protein RBP45 275 369 - -
Hepe01g1741 374 Pfam RNA recognition motif 291 354 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 Pfam RNA recognition motif 176 246 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 Pfam RNA recognition motif 83 150 IPR000504 GO:0003723(InterPro)
Hepe01g1741 374 CDD RRM3_NGR1_NAM8_like 288 359 - -
Hepe01g1741 374 CDD RRM2_SECp43_like 173 252 - -
Hepe01g1741 374 Gene3D - 161 270 IPR012677 -
Hepe01g1741 374 FunFam Polyadenylate-binding protein RBP47B 162 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1741 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1741 Hepe-Chr1:82571237 Hepe08g1069 Hepe-Chr8:10395109 2.11e-145 dispersed
Hepe02g0413 Hepe-Chr2:3944863 Hepe01g1741 Hepe-Chr1:82571237 2.69e-15 transposed
Hepe04g1141 Hepe-Chr4:66533380 Hepe01g1741 Hepe-Chr1:82571237 8.33e-10 transposed
Hepe05g1492 Hepe-Chr5:64382558 Hepe01g1741 Hepe-Chr1:82571237 2.90e-06 transposed
Hepe10g1653 Hepe-Chr10:53197576 Hepe01g1741 Hepe-Chr1:82571237 3.47e-06 transposed
Hepe01g1741 Hepe-Chr1:82571237 Hepe10g0703 Hepe-Chr10:9382242 2.68e-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117