Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1783 ATGAATGCCCATCATTCTTCAATCCGACACATCTCAGAGTGCTTTGTCAAACAAGAATGCCTTCCGGAGGAATCAAAGCTTCCCTTTCATTTGATCCCTGGAGATCTCGCCATGCTTTCCCTCCACTATATCCAGAAAGGTCTTCTCTTTCGCAAACCCTCTGATGCCTTTAACGACGGAAACCGTTTTATGCACACTCTTCTTAGCCGCCTGAAAAACTCCCTCTCCATCGCTCTGTTTCATTTCTACCCACTTTCCGGCCGCCTCGCCACCGTCACAAACGAAAACCCACCTTCCATCTCCGTTTATGTTGACTGTGTCAACAGCCCCGGAGCCAAGTTCATCCACGCCGCCGTCGACATCACAATTTCCGATGTTCTGTCCCCCGTCGACGTGCCTTTAGTAGTCCAATCTTTCTTTGACCACGACAGGGCCGTCAACTACGACGGGCGTACCCTGCCTCTGCTTTCCATTCAGGTAACGGAATTACTCGACGGCGTCTTCATCGGCTGTTCCTTCAACCATGCTCTCGGCGACGGAACCTCCTACTGGAATTTCTTCAATATGTGGTCTGAGATTTTTCAATCGGCACCGTCAGATGGGGATGATGAAATTATTTCAATTTCACGGCCGCCCATTTTGAATCGGTGGTTTCCCGATGGGATTGGTCGAATAATCAATCTCCCCTTCACCCACGAGGATCAATTCATAAGCAGATTCGAAGCGCCGGAGCTCAGGGAGAGAATATTCCACTTTTCAGCAGAATCAATAGCAGTTTTGAAAGCAAAAGCCAACGCAGAGTACAACACCAAAGAAATTGAAATCTCCTCATTCCAATCGCTGACTGCACTAGTATGGCGATCCATAACAAGGGCACGTCGGGTGCCGGAGAATGAAAGCACGAGTTGCAGCATGGCGGCGAACAACAGAGGAAGACTAGAGCCACCCTTATCCAAAGAGTATTTTGGGAACGTAGTTACAGCGCTGAGAGCGGATGCAAAAGCAGGGGAATTGGTTGAAAAGGGATTGGGTTGGGCGGCGTGGAAGTTGCACGAAGCTGTGGTCCAGAATACGAACGAAAAGCTAAGGGAGTCGCTTCAAAAGTGGCTGCAATCTCCGTTTACTTTTCAACTGGGTCGATTCTTTGAGGCTTATAGCGTGATGATGGGGAGCTCGCCGAGGTTCAATAAATATGGGAATGAATTTGGAATGGGGAAAGCAGTGGCTTTGCGGAGTGGATATGCGAACAAGTTCGACGGCAAGGTTTCTTCGTATCCAGGATATGAGGGAGGAGGAAGTGTAGATTTAGAGATTTGTTTGCTTCCACAAAATATGCAAAATTTGGAGTCTGATTTGGAGTTCATCAATGCTGTCTCTTCTTCCCCACATTACTTATGA 1398 48.14 MNAHHSSIRHISECFVKQECLPEESKLPFHLIPGDLAMLSLHYIQKGLLFRKPSDAFNDGNRFMHTLLSRLKNSLSIALFHFYPLSGRLATVTNENPPSISVYVDCVNSPGAKFIHAAVDITISDVLSPVDVPLVVQSFFDHDRAVNYDGRTLPLLSIQVTELLDGVFIGCSFNHALGDGTSYWNFFNMWSEIFQSAPSDGDDEIISISRPPILNRWFPDGIGRIINLPFTHEDQFISRFEAPELRERIFHFSAESIAVLKAKANAEYNTKEIEISSFQSLTALVWRSITRARRVPENESTSCSMAANNRGRLEPPLSKEYFGNVVTALRADAKAGELVEKGLGWAAWKLHEAVVQNTNEKLRESLQKWLQSPFTFQLGRFFEAYSVMMGSSPRFNKYGNEFGMGKAVALRSGYANKFDGKVSSYPGYEGGGSVDLEICLLPQNMQNLESDLEFINAVSSSPHYL 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82913753 82915872 - Hsped.01g17830.1 Hepe01g1783 560893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1783 465 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 11 457 IPR051283 -
Hepe01g1783 465 Pfam Transferase family 35 454 - -
Hepe01g1783 465 Gene3D - 233 451 IPR023213 -
Hepe01g1783 465 Gene3D - 10 228 IPR023213 -
Hepe01g1783 465 FunFam Tryptamine hydroxycinnamoyl transferase 232 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1783 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1780 Hepe-Chr1:82901645 Hepe01g1783 Hepe-Chr1:82913753 9.87e-217 dispersed
Hepe01g1781 Hepe-Chr1:82904510 Hepe01g1783 Hepe-Chr1:82913753 2.60e-207 dispersed
Hepe01g1783 Hepe-Chr1:82913753 Hepe02g3330 Hepe-Chr2:82882100 1.40e-99 dispersed
Hepe01g1782 Hepe-Chr1:82907413 Hepe01g1783 Hepe-Chr1:82913753 1.77e-243 tandem
Hepe01g1783 Hepe-Chr1:82913753 Hepe01g1784 Hepe-Chr1:82917715 4.04e-238 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g740 . . . Bda03g00207 . . . . . . Cma01g01829 . . . . Cpe06g00169 . . . . . . . . . . . . . . . . . . . Lsi04g01539 Csa04g02427 . . . . . . . . . . . Cmo01g01885 Cmo09g00239 . . . . . . Bhi09g03302 Tan01g4754 . . Hepe01g1783 Mch11g0310 . Cla05g02055 Cam05g2209 Cec05g2225 Cco05g2268 Clacu05g2201 Cmu05g2067 Cre05g2193 . . Chy07g00145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000366 2 4 2 1 1 5 0 6 6 3 4 6 3 5 5 6 6 2 2 6 6 1 6 6 7 5 9 6 6 2 129