Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1785 ATGGAAGGAGAAATTTGCTCGGCTGTAACGGGTTCAGAGAAGAGGAAGCACCAAAGGCAACAGAATCATCTTCAACAAGACAAAGACAAGCCCTACAGAGGAATCAGGATGAGGAAGTGGGGAAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCAAGGATTTGGCTTGGTTCATACACAACTCCCGTCGCCGCCGCTAGAGCTTACGACACCGCCGTCTTCTATCTACGAGGACCCACCGCACGACTAAACTTCCCCGAATTGATATTCGAAGAGGACCACCTTAACGACGTCTCCGCTGCCTCCATACGGAAAAGAGCCACCGAAGTCGGCGCTCGGGTTGACGCCATCCAGACCTCTCTCCACGCCACCTCTAACTCCAACTCTCAAATTATTTCTGAGAAGCCCGATTTAAACGAGTATCCCAACCCCGAAACCTCAGACGACGATTAA 459 51.2 MEGEICSAVTGSEKRKHQRQQNHLQQDKDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELIFEEDHLNDVSAASIRKRATEVGARVDAIQTSLHATSNSNSQIISEKPDLNEYPNPETSDDD 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82925766 82927314 - Hsped.01g17850.1 Hepe01g1785 560895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1785 152 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1785 152 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1785 152 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1785 152 MobiDBLite consensus disorder prediction 1 31 - -
Hepe01g1785 152 Pfam AP2 domain 32 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1785 152 MobiDBLite consensus disorder prediction 126 152 - -
Hepe01g1785 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 151 - -
Hepe01g1785 152 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Hepe01g1785 152 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1785 152 CDD AP2 32 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g1785 152 MobiDBLite consensus disorder prediction 9 31 - -
Hepe01g1785 152 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677(InterPro)
Hepe01g1785 152 SMART rav1_2 31 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1785 Hepe-Chr1:82925766 Hepe10g1428 Hepe-Chr10:50939558 3.59e-46 dispersed
Hepe01g1785 Hepe-Chr1:82925766 Hepe02g0583 Hepe-Chr2:5908045 1.44e-20 wgd
Hepe01g1785 Hepe-Chr1:82925766 Hepe04g1259 Hepe-Chr4:68112480 6.50e-52 wgd
Hepe01g1785 Hepe-Chr1:82925766 Hepe08g1300 Hepe-Chr8:14624379 7.41e-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54859 PF00847 AP2 2.30E-11 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1785 K09286 - csv:101219005 253.832