Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1792 ATGGACCAGAATCGACAGGTCAGTTCCCCGATGCCTTGCATACAGAAGAAAGGGCATCGCTTTGACTCGAATCCCTTTTCTTTTATCTTCTCTTCTCTTTTGCTTTGCTTCCTCCCCAATTTCACATCTTTTTTCTTTCTTTGTATTTGTATAAATACTCTCCTCTTTCACCCCTCCCTCTGTTTTACTTTTCGTATGCTTCTTCTTAAGAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGTGGATGCTGCTACTACTAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCCAGAATTTCCTCAGATTGATGTCTCATCATACCCCTCCTCATCAACACCATTCTTCCACTTCCATTACTCCCAATTCTTCCGCTGGTTATGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAGAAGGTCATTTCTTTGCTTGACCGCAACCGAACCGGCCATGCCCGCTTCAGAAGGGCTCCCGTCCTTCCTACTTCTACTACTACTTCCACTCCCCTTCCGCCTCCTCTTCCGCTCAAGCCCAAGCCACACCACCAAGATCCTAGTTTTTCGTCTCAGATTCAAGTGAAGAAACAGGAATCAGTCTCTGCTTTCAAGGTTTATTGCCCCACGCCCTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACCCTTCTAATCCACAAAATACCTTCCAACCCCAGCAAAATTCTTCGTCGGTGGTCCATAAAAATGGGTCTGTAGATAGAAAAGATTCGACTACCACCATCAATTTCGCCGCCTCGCCCTCGATTTCCGCTGCGAATTCGTATATTTCATCGCTTACCGGAGACACAGAAAGCTTACAGCCATCTCTGTCATCTGGGTTTCAGTTCACCCACATGTCACAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCATCCTCCTCGCTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCATGAAGTGCGGCTCCACTTCCAGCCGGTGTCACTGCTCCAAGAAGAGGAAAAACAGGATAAAGAGAGTGATGAGAGTTCCCGCCGTTAGTTCGAAACTCGCCGATATCCCACCGGACGATTACTCATGGAGAAAGTACGGCCAAAAACCCATTAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGCCTGAGAGGGTGTCCAGCAAGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACTGAACAACCACCTGCACCGCTTGTTCTCGAATCAACATAG 1329 47.86 MDQNRQVSSPMPCIQKKGHRFDSNPFSFIFSSLLLCFLPNFTSFFFLCICINTLLFHPSLCFTFRMLLLKNNMAVELMVGFVDAATTKMEENAAVSAVQEAASAGIQSVQNFLRLMSHHTPPHQHHSSTSITPNSSAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLPTSTTTSTPLPPPLPLKPKPHHQDPSFSSQIQVKKQESVSAFKVYCPTPSSVVRLPPLPHPSNPQNTFQPQQNSSSVVHKNGSVDRKDSTTTINFAASPSISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMDDSAMKCGSTSSRCHCSKKRKNRIKRVMRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTEQPPAPLVLEST 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82975299 82977795 - Hsped.01g17920.1 Hepe01g1792 560902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1792 442 Pfam Plant zinc cluster domain 321 366 IPR018872 -
Hepe01g1792 442 MobiDBLite consensus disorder prediction 238 253 - -
Hepe01g1792 442 MobiDBLite consensus disorder prediction 178 193 - -
Hepe01g1792 442 Pfam WRKY DNA -binding domain 370 426 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1792 442 SMART WRKY_cls 368 428 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1792 442 FunFam WRKY transcription factor 65 352 429 - -
Hepe01g1792 442 ProSiteProfiles WRKY domain profile. 363 429 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1792 442 MobiDBLite consensus disorder prediction 228 260 - -
Hepe01g1792 442 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 95 430 IPR044810 GO:0003700(InterPro)
Hepe01g1792 442 MobiDBLite consensus disorder prediction 423 442 - -
Hepe01g1792 442 SUPERFAMILY WRKY DNA-binding domain 366 427 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1792 442 MobiDBLite consensus disorder prediction 166 206 - -
Hepe01g1792 442 Gene3D WRKY domain 354 429 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1792 Hepe-Chr1:82975299 Hepe09g0437 Hepe-Chr9:3944685 6.19e-59 dispersed
Hepe01g2092 Hepe-Chr1:85524699 Hepe01g1792 Hepe-Chr1:82975299 2.94e-67 transposed
Hepe01g1792 Hepe-Chr1:82975299 Hepe04g1263 Hepe-Chr4:68169831 1.89e-75 wgd
Hepe01g1792 Hepe-Chr1:82975299 Hepe08g1152 Hepe-Chr8:11676588 2.76e-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54861 PF03106 WRKY 4.80E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1792 - - - 0.0