Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1793 ATGGGGACCTACCGTTCATCTCCGATTATGGCTTTCCTCTTCTTCGTGATGATGACTTCATCATTGGCGTTGGCTTCTTCGATCATCCCGGAGAGGACGGACGATGAGGTGGTGGCGCTCTACGACGAGTGGCGTGCCAAACACGGGAAGTTGCACAACGGCTTGGTAGGAGAGCAGGAGAATCGATTCGATATCTTCAAGGACAATCTCAAGTACATCGATGAAATCAACGCCCAAAATTTGCCCTACCGATTAGGTTTGAATGTGTTCGCAGATCTGACGAACGAGGAGTACCGATCTAAGTACTTGGGAGCCAAATTCGCCGCCGGTTCAAGGCGGAACAAGACCACCAGTCGCTCTCGCCTTGGGGATAAGGTCCCCGACTCTATTGATTGGAGGGAGAAAGGAGCCGTCGCTCCCGTTAAAGACCAGGGGAGTTGTGGGAGTTGCTGGGCGTTCTCAACTATAGCCGCCGTGGAAGGCATAAACCAGGTTGTTACCGGCGACTTGATAACCTTATCAGAACAGGAGCTGGTGGATTGTGACACTTCTTATAACGAAGGTTGCAATGGAGGCTTAATGGACTATGCCTTCGAATTCATCATCAACAATGGTGGCATCGACACTGAAAACGATTATCCTTACAACGGCTTTGATAGCTCCTGCATCCAATATAAGAAAAATGCTAGGGTCGTTTCAATTGATGGCTATGAAGATGTCCCTGTAAACGATGAGAAAGCACTGCAACAAGCAGCAGCTAAACAGGTTGTGGCTGTTGCCATTGAAGGAGGTGGTAGAAGTTTCCAGCTTTATAATTCGGGTGTTTTCACTGGAAAGTGTGGAACAAGTTTGGACCATGGTGTTAATGTGGTTGGATATGGGTCTGAAGGGGGCGTTGATTACTGGATTGTGAGAAACTCATGGGGTGCGAGCTGGGGTGAAAAGGGCTACATCAGGATGCAACGTAACATCGCTTCGCCAAATGGTATCTGTGGGATTGCAATGGAGGCTTCCTACCCTATTAAAAACGGACCAAACCCACCAAATCCAGGCCCGACTCCTCCAAGTCCGGTGTCACCACCATCTGTATGTGACGAATATTACACCTGTCCCGCCGCTGAAACTTGCTGCTGCATCTTCCAGTTCTCAAACTTGTGCCTTGAATGGGGATGCTGCCCACTTGAAAGCGCCACCTGCTGTGATGACCATTATAGCTGCTGCCCCCATGACTTCCCCGTCTGTAACGTCCGTGCTGGAACCTGCTTGAAGGGCAAGAATGATCTTGTCGGAGTGAAGGCAATGAGGCGCACTACAGCTGCAGCCAAACCATCGTGGGCATTTGGAGGTGCGACTGTTGGAAAGAGCAGTGCTTGA 1374 50.0 MGTYRSSPIMAFLFFVMMTSSLALASSIIPERTDDEVVALYDEWRAKHGKLHNGLVGEQENRFDIFKDNLKYIDEINAQNLPYRLGLNVFADLTNEEYRSKYLGAKFAAGSRRNKTTSRSRLGDKVPDSIDWREKGAVAPVKDQGSCGSCWAFSTIAAVEGINQVVTGDLITLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTENDYPYNGFDSSCIQYKKNARVVSIDGYEDVPVNDEKALQQAAAKQVVAVAIEGGGRSFQLYNSGVFTGKCGTSLDHGVNVVGYGSEGGVDYWIVRNSWGASWGEKGYIRMQRNIASPNGICGIAMEASYPIKNGPNPPNPGPTPPSPVSPPSVCDEYYTCPAAETCCCIFQFSNLCLEWGCCPLESATCCDDHYSCCPHDFPVCNVRAGTCLKGKNDLVGVKAMRRTTAAAKPSWAFGGATVGKSSA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82990518 82996112 + Hsped.01g17930.1 Hepe01g1793 560903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1793 457 Pfam Granulin 375 422 IPR000118 -
Hepe01g1793 457 CDD Peptidase_C1A 127 340 IPR039417 -
Hepe01g1793 457 SMART pept_c1 126 341 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe01g1793 457 SUPERFAMILY Cysteine proteinases 33 341 IPR038765 -
Hepe01g1793 457 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe01g1793 457 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe01g1793 457 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe01g1793 457 Pfam Cathepsin propeptide inhibitor domain (I29) 41 98 IPR013201 -
Hepe01g1793 457 Gene3D Cysteine proteinases 20 343 - -
Hepe01g1793 457 SUPERFAMILY Granulin repeat 361 395 - -
Hepe01g1793 457 Pfam Papain family cysteine protease 126 341 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe01g1793 457 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Hepe01g1793 457 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 37 338 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Hepe01g1793 457 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Hepe01g1793 457 SMART Inhibitor_I29_2 41 98 IPR013201 -
Hepe01g1793 457 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Hepe01g1793 457 Gene3D Granulin 361 424 IPR037277 -
Hepe01g1793 457 SMART GRAN_2 364 421 IPR000118 -
Hepe01g1793 457 FunFam Cysteine protease 1 23 343 - -
Hepe01g1793 457 FunFam Cysteine protease 1 361 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1793 K25900 - - csv:101217590 788.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1793 Hepe-Chr1:82990518 Hepe02g0352 Hepe-Chr2:3323171 6.83e-126 dispersed
Hepe01g1793 Hepe-Chr1:82990518 Hepe02g0601 Hepe-Chr2:6248705 4.70e-164 wgd
Hepe01g1793 Hepe-Chr1:82990518 Hepe04g1265 Hepe-Chr4:68199200 1.08e-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33