Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1808 ATGTTGATGTTGCTGTCATCATTTTCTCTCCCTCCGGAAAACTCAACTTTTCTCTCTAATGCAAGGGCATTTGAACGCAATTTGTCGAAGATCACAACGCTCTGCGAGGCGGAAAGAGTGGAGAAAATTCTTGGGGAGACCTTGAGTATAGTGTTTGAGTGCAAGCAATTGCTCCAGCTTCAGCAGCAGTGCAATTCCTCTGAACCGTTGGCGGAACTTTTACGCGTACTGGAGCGACCTCCTTCCCACCGATCCCTAGAAATCTCGTCGATTGTTCCCGACGGAGATAACAGCGGTCCTGGAATCCGGCGAACCCCGGATCCGAGCTCCACTGAATCTATGGAGGATAAGGAGAATATATTTCGAGTCACTCGGGGTTCTAAGAAGAGAGCGGCGGAGGCCGCTACCCCCGACGACCGCTCTGCCAACAAGAGGAGAGTCGTTCTTGGCGAGCTTCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGCAAGTCCAAGTCCAGAACCAACAGGCACAGACGGAGAGTTAAATCCAGGGATACTGCTGGGACCAGTGCTGCTGCTGAACTCAATCCACTCCCGGAACCTGACGTTAAGTTATCAGATGAGACGAATTCGGAAGACCCACAAATGTGCAGGGTTTACGCCCCTGATATTTATGAGTATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCATACCGGATTACATCGGGAGAGTACAAAGGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTTGTTTCAGACACTCTTTACCTTTCTATTTCATATGTTGACAGATACTTATCTCTAAATGCAATCAGCAGGCAAAAACTTCAATTGTTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGACATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTAAGGAGATTCACAATGATTGCTCAAGAAAGTTATGAATTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTTATTGCTGCATCTGTTATGTTTCTAGCACGATATATGATCCAACCTAAAAAGCATCCTTGGATCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCAGATATGAAAGATTGCGTTCTACTTCTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCCATAAGGGATAAATACAAACAACACAAGTTCAAATTTGTGTCTGTGATGGCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1461 43.81 MLMLLSSFSLPPENSTFLSNARAFERNLSKITTLCEAERVEKILGETLSIVFECKQLLQLQQQCNSSEPLAELLRVLERPPSHRSLEISSIVPDGDNSGPGIRRTPDPSSTESMEDKENIFRVTRGSKKRAAEAATPDDRSANKRRVVLGELPILQNATSSVDRKSKSRTNRHRRRVKSRDTAGTSAAAELNPLPEPDVKLSDETNSEDPQMCRVYAPDIYEYLRAMETDPRRRPIPDYIGRVQRDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGNPTIKTFLRRFTMIAQESYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVMFLARYMIQPKKHPWISRLEHFTGYKPADMKDCVLLLHDLYLSRRGGALAAIRDKYKQHKFKFVSVMASPPEIPIPYFEDVRI 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83084556 83090842 - Hsped.01g18080.1 Hepe01g1808 560918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1808 486 SUPERFAMILY Cyclin-like 208 347 IPR036915 -
Hepe01g1808 486 Gene3D - 219 469 - -
Hepe01g1808 486 CDD CYCLIN_AtCycA-like_rpt2 350 464 - -
Hepe01g1808 486 SUPERFAMILY Cyclin-like 350 474 IPR036915 -
Hepe01g1808 486 Pfam Cyclin, C-terminal domain 350 471 IPR004367 -
Hepe01g1808 486 SMART cyclin_7 354 442 IPR013763 -
Hepe01g1808 486 SMART cyclin_7 257 341 IPR013763 -
Hepe01g1808 486 ProSitePatterns Cyclins signature. 252 283 IPR048258 -
Hepe01g1808 486 FunFam Cyclin A1 337 469 - -
Hepe01g1808 486 MobiDBLite consensus disorder prediction 85 207 - -
Hepe01g1808 486 SMART Cyclin_C_2 350 473 IPR004367 -
Hepe01g1808 486 Gene3D - 233 348 - -
Hepe01g1808 486 FunFam Mitotic cyclin 6 235 335 - -
Hepe01g1808 486 PANTHER CYCLINS 203 461 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe01g1808 486 Pfam Cyclin, N-terminal domain 219 347 IPR006671 -
Hepe01g1808 486 MobiDBLite consensus disorder prediction 109 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1808 Hepe-Chr1:83084556 Hepe08g1310 Hepe-Chr8:14851347 1.86e-154 dispersed
Hepe08g0180 Hepe-Chr8:1558417 Hepe01g1808 Hepe-Chr1:83084556 6.37e-46 transposed
Hepe01g1808 Hepe-Chr1:83084556 Hepe02g0630 Hepe-Chr2:6598898 2.85e-102 wgd
Hepe01g1808 Hepe-Chr1:83084556 Hepe08g1309 Hepe-Chr8:14807717 2.16e-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1808 K06627 - csv:101207493 672.544