Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1821 ATGAGTTGCAACGGTTGCAGAGTTCTTCGAAAGGGTTGCAGCGAAGGATGCGTTTTAAGATCAACCCTCCATTGGATTGATTCCCCTGAATCTCAAGGCAACGCCACCTTATTTCTCGCTAAATTCTTCGGCCGTAGTGATCTTTTGTCTTTCATCTCCGCCGTTCCCCATCATCAAAGACCCGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGCGGCCGCACGGTGAACCCAGTCAGCGGTGCTGTTGGCCTTTTGTCGAGCGGGAACTGGCACGTTTGCCAGGCGGCGGCGGAGACCGTTCTCAGCGGCGGAAATCTCCGGCCGATACCTGGAATCGAACTTTCTGGAAATCCCACGCTCAAAGTCGATGAATCATCTCTCACTTTTAATACCGATGTCTGGACCACCACCACACATAATCTCCAATTTTACCCTTCCATTCCGTCCGGTTTCCGGCGTCTCTCCGATCTGAGAGGGAAGAAGCATCCGTTGGAGAATCGGCGCTCTCTCGATTCAGAGGAGTCTGTTATGACCAGCTTTGGAAACGGCGATCTCGGCGACGGAGACCGGCGGAAAGAGAGAAAGCTTTTGAACTTATTCATCTGA 609 51.72 MSCNGCRVLRKGCSEGCVLRSTLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLSGGNLRPIPGIELSGNPTLKVDESSLTFNTDVWTTTTHNLQFYPSIPSGFRRLSDLRGKKHPLENRRSLDSEESVMTSFGNGDLGDGDRRKERKLLNLFI 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83160114 83161426 - Hsped.01g18210.1 Hepe01g1821 560931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1821 202 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Hepe01g1821 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 159 - GO:0010468(PANTHER)
Hepe01g1821 202 MobiDBLite consensus disorder prediction 164 188 - -
Hepe01g1821 202 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1821 Hepe-Chr1:83160114 Hepe02g0980 Hepe-Chr2:11929986 1.83e-47 dispersed
Hepe01g1821 Hepe-Chr1:83160114 Hepe04g1305 Hepe-Chr4:68662327 8.81e-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54863 PF03195 LOB 1.80E-24 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1821 - - - 0.0