Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1822 ATGGCTCTTGAAGCTCTGAATTCTCCCACCACTCCCTCACCAGCGCTCCACTACGACGACCCCAGCCCCAATTCGTCTTGGTCTAAGCGAAAGAGAACCAAGCGTCCACGCGGCTTCGACAACCCTCCCACCGAGGAAGAGTATTTAGCACTGTGTCTCATCATGCTTGCTCGCGGCGGCGCCACCGTTTCCGACTCTGACAACCGACTTGCCTATGAAATTCCCATTCCGGCTCAGCCCATATCGGTTGTTAAACTTACCTACAAGTGCTCTGTTTGCGACAAGGCGTTTTCGTCTTACCAAGCTTTGGGCGGACACAAAGCCAGCCATAGAAAATCTGCTACAGGGGAAGACCAGTCCACTTCCTCCACCACCACCACTTCCGCCGCTGCTTCCGTCGGTGGAGGTAAATCCCACGAGTGCTCTATTTGCCACAAGTCTTTTCCGACTGGCCAGGCCTTGGGCGGTCACAAGCGCTGCCACTACGACGGCGGAATCGGTAACAACAACCACCACACACAGAGTCACAAGAACAACAACCAAGCCGTGACATCGTCGGAAGGAGTGGGGTCGACCCACAGCCACCGCGACTTTGACCTCAACCTCCCGGCCTTGCCGGAGCTATCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCACGTGTGTTAACGATTCCCAAAATCGAAATTACTCAAAATTAA 732 54.64 MALEALNSPTTPSPALHYDDPSPNSSWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATVSDSDNRLAYEIPIPAQPISVVKLTYKCSVCDKAFSSYQALGGHKASHRKSATGEDQSTSSTTTTSAAASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGIGNNNHHTQSHKNNNQAVTSSEGVGSTHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRVLTIPKIEITQN 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83170123 83171587 - Hsped.01g18220.1 Hepe01g1822 560932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1822 243 MobiDBLite consensus disorder prediction 115 133 - -
Hepe01g1822 243 SUPERFAMILY beta-beta-alpha zinc fingers 87 161 IPR036236 -
Hepe01g1822 243 MobiDBLite consensus disorder prediction 105 136 - -
Hepe01g1822 243 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Hepe01g1822 243 MobiDBLite consensus disorder prediction 1 42 - -
Hepe01g1822 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Hepe01g1822 243 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 17 207 IPR044653 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Hepe01g1822 243 MobiDBLite consensus disorder prediction 167 191 - -
Hepe01g1822 243 Pfam C2H2-type zinc finger 139 163 IPR013087 -
Hepe01g1822 243 Pfam C2H2-type zinc finger 88 113 IPR013087 -
Hepe01g1822 243 MobiDBLite consensus disorder prediction 1 23 - -
Hepe01g1822 243 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Hepe01g1822 243 Gene3D Classic Zinc Finger 86 161 - -
Hepe01g1822 243 SMART c2h2final6 88 110 IPR013087 -
Hepe01g1822 243 SMART c2h2final6 139 161 IPR013087 -
Hepe01g1822 243 MobiDBLite consensus disorder prediction 165 202 - -
Hepe01g1822 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1822 Hepe-Chr1:83170123 Hepe05g0293 Hepe-Chr5:3604240 1.02e-16 dispersed
Hepe09g0258 Hepe-Chr9:2214417 Hepe01g1822 Hepe-Chr1:83170123 3.16e-10 dispersed
Hepe01g1822 Hepe-Chr1:83170123 Hepe02g0647 Hepe-Chr2:6757587 6.62e-49 wgd
Hepe01g1822 Hepe-Chr1:83170123 Hepe08g1327 Hepe-Chr8:15102253 7.60e-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54864 PF13912 zf-C2H2_6 1.40E-12 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1822 - - - 0.0