Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1841 ATGGCCACTCCCCTTTTGAGCTCCTCCGTTTTCTTCGTTCTACTTTTTCAGCTGGTCGCCGCCGCCGCAGAAGACTCATTTTGGAATGTGAAGTATCTGCCGGGATTCTCAGGCCGTCTTCCGTTCGAGCTCGAAACAGGATACGTTGGTGTCGGGGATTCAGAGGAAGTACAATTGTTTTATTACTTTGTAAAATCTCAAGGAAATCCCCAAACGGATCCTCTAATGACGTGGTACACCGGAGGTCCCGGTTGCTCTGCTCTATGTGGACTTGCCTTTGAAATTGGTCCGGTAAATTTCAAGGTAGAGCCATACAATGGAAGCCTACCTCAACTAATCTTGAATCCCTATACATGGACCAAGAAAGCCAGTATACTATTTATAGATACGCCTGTGGCCACTGGATTTTCATATTCTCAAACTCAACAAGCTTCCAAAAAAGGAGATTTTAGACAAGTTCAACAAAATCATCAATTTTTGAGAAAGTGGTTGGCCAATCATCCACAATTTTTATCTAATTCATTTTATGTTGGTGGAGACTCATATACTGGTATGATCATTCCACCTCTTACTCAAGCAATCTCAGAAGGAAATAAACATGCTTTGCCAGTTATAAACCTTAAGGGATACATAGAGGGAAGTCCCAACGCTATAAGTAGATCATATAACAATTTCAGGATTCCTTTTGCTCATAATATGAAGCTCATCTCTGATGAATTGTATGAGTCATTGACAAGTAGTTGCAAAGGAGAATATGATGACGTTGATCCAAGCAATTTGGAGTGCATAAAACACGTAAAAAAGTTCAAAAAGCTTGTGAGCAGAATCTATCATTGGTGCATTTCATGGCCTTTTTGTGAGGACGTTTCTTCTGCGCCACAAGAAACATTTGGTGCCCGGAGATCTCTCTATAATAACTCCAAAGTGCTTCTTGCTCCCAAAGTGCTACCTCCTCCTTCACTTGACTGTCAAGAGTATAAATACTTCCTCGCTTATTATTGGGCTAACGATCAACAAGTTCAAAAAGCACTTCATATACGCGAGGGAACTATTGGAGAATGGGTAAGATGTCAGAGTCGTAAAGATTACAACTACGAGATTATGAATGTTGTTCCTTATCATGCGAACCTTGGTTCTAAAGGTTATCGGTCTTTGGTTTTTAGTGGGGATCATGATATGATGGTGCCGACTCTAGACACGGAAGCATGGATCAAATCTCTAAATTATTCCATTGTCGATGATTGGAGACCTTGGTTTAACATGAATGATCAAGTACTCGGATACACAAGATCGTATGCAAACAACATGACATTTGCAACAATAAAAGGAGGAGGGCACACACCAGAATACATGCCAATCCAATGTGACATAATGTTTGATAGATGGATATCGGGAGAATCCTTATAA 1407 40.58 MATPLLSSSVFFVLLFQLVAAAAEDSFWNVKYLPGFSGRLPFELETGYVGVGDSEEVQLFYYFVKSQGNPQTDPLMTWYTGGPGCSALCGLAFEIGPVNFKVEPYNGSLPQLILNPYTWTKKASILFIDTPVATGFSYSQTQQASKKGDFRQVQQNHQFLRKWLANHPQFLSNSFYVGGDSYTGMIIPPLTQAISEGNKHALPVINLKGYIEGSPNAISRSYNNFRIPFAHNMKLISDELYESLTSSCKGEYDDVDPSNLECIKHVKKFKKLVSRIYHWCISWPFCEDVSSAPQETFGARRSLYNNSKVLLAPKVLPPPSLDCQEYKYFLAYYWANDQQVQKALHIREGTIGEWVRCQSRKDYNYEIMNVVPYHANLGSKGYRSLVFSGDHDMMVPTLDTEAWIKSLNYSIVDDWRPWFNMNDQVLGYTRSYANNMTFATIKGGGHTPEYMPIQCDIMFDRWISGESL 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83318481 83321459 - Hsped.01g18410.1 Hepe01g1841 560951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1841 468 FunFam Carboxypeptidase 322 467 - -
Hepe01g1841 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 462 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Hepe01g1841 468 FunFam Serine carboxypeptidase-like 11 24 468 - -
Hepe01g1841 468 Gene3D alpha/beta hydrolase 24 297 IPR029058 -
Hepe01g1841 468 Pfam Serine carboxypeptidase 34 465 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g1841 468 SUPERFAMILY alpha/beta-Hydrolases 30 466 IPR029058 -
Hepe01g1841 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g1841 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g1841 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g1841 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Hepe01g1841 468 Gene3D - 322 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1841 Hepe-Chr1:83318481 Hepe03g0050 Hepe-Chr3:630147 9.26e-274 dispersed
Hepe01g1839 Hepe-Chr1:83290666 Hepe01g1841 Hepe-Chr1:83318481 8.12e-58 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1841 K16296 - csv:101210918 550.821