Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1842 ATGCCGATGTACCAGCCTAATTCCGGTCGGAGAAGAGAGGCCGATTCGGAGCTGGGTGGTGGTGGTGGGCAAGTTCTTGATGTCGAAACCGCCGTGAAAGATGGTATTCTCGGCGGCGTTGGTGGCGGCGGTGGGTTAATCTGCGATGGTGGAGGGGCTGAGAAATTGGATCTGAAGGAGATTGTGGAGGAGCTTGATAACATTGAGGTTCCTTCTGTGTTTATTTGCCCAATTTCATTAGAGCCAATGCGAGATCCTGTGACCCTTTGTACGGGACAGACCTATGAAAGATCCAATATCCTCAAATGGTTTTCTCTTGGTCATTTCACATGTCCTACCACAATGCAAGAGCTTTGGGATGATTCAATCACCCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTTCGCAGAAGTATTTCGCTATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCCCTTGAGCTCTTAGACACTTTGAAGAAGGTCAAGGGCCAAACCAGAGTCCGGGCTTTGAAGGAGCTTCGGCAAGTTGTCGCCTCGAATTCTTCGGCGAAGAAGACCGTGGAAGACAATGGCGGTCTTGCTTTGATTTCGTCTCTGTTGGGTCCTTTCACATCCCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGAGCTCGATGCCGAGTCAAGGAGAAACCTCCTTCAACCTGCGAAGATTTCGTTGATGGTGGATATGTTGAATGAGGGATCCACTGAGACCAAAATTAACTGCACTAGACTGATTGAAACGTTGCTGGATGGGGATGATTGCAGAGCGGAAACTGTCTCGAGTTTGAGTCTCTTGGTTGGATTGTTAAGATTAATAAAGGAAAGGAAACACCCAAATGGTGTTGTGGCTGGATTAAGATTGCTTAAAGCTCTGTGCTGCCAAGACCCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATCCCACAATTGATAGAAATTCTCCCGAATTTTAACCCCGAATGTTTGGAACTATCCCTTCATGTATTGGAATCGCTCTCAACCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTGAAGTTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGTTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTAGCCCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGCGGTTGCAATCCCGTTCTGAAACAACGCTCTGCCGAGCTTCTAAAGCTCTGCAGCTTAAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1365 47.55 MPMYQPNSGRRREADSELGGGGGQVLDVETAVKDGILGGVGGGGGLICDGGGAEKLDLKEIVEELDNIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFSQKYFAMKKRSEDVQGRALELLDTLKKVKGQTRVRALKELRQVVASNSSAKKTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLELDAESRRNLLQPAKISLMVDMLNEGSTETKINCTRLIETLLDGDDCRAETVSSLSLLVGLLRLIKERKHPNGVVAGLRLLKALCCQDPVRNSVVSIGAIPQLIEILPNFNPECLELSLHVLESLSTLSEGRVALKDCPNTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83339379 83341876 + Hsped.01g18420.1 Hepe01g1842 560952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1842 454 SUPERFAMILY ARM repeat 145 436 IPR016024 -
Hepe01g1842 454 SUPERFAMILY RING/U-box 64 141 - -
Hepe01g1842 454 PANTHER WDSAM1 PROTEIN 67 449 IPR045185 GO:0061630(InterPro)
Hepe01g1842 454 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1842 454 CDD RING-Ubox_PUB 71 121 IPR045210 -
Hepe01g1842 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Hepe01g1842 454 Gene3D - 144 448 IPR011989 -
Hepe01g1842 454 MobiDBLite consensus disorder prediction 1 23 - -
Hepe01g1842 454 Pfam U-box domain 70 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe01g1842 454 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1842 Hepe-Chr1:83339379 Hepe04g1125 Hepe-Chr4:66242902 2.42e-39 dispersed
Hepe01g1842 Hepe-Chr1:83339379 Hepe08g1345 Hepe-Chr8:15482837 1.45e-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1842 - - - 0.0