Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1848 ATGGCCTGCAATAACAGAACCCAATCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAATAAGCCAGGGGTGTGCAAATCAGCGCACCGCCGCCTCGACGACGACGACGCTGGTCTGGTGCAGAAGCAGCTCCGTCCTCCGCCGTGTACTCCGGCGAGGAAAGGCAACATGAAGGTGCAGAAAGATGGGGGCATTGGGGACCCTTTTCTTGCAGCGTTCAGAGAGTGCACAGTTGGAGATGGCGAGAAGAATAAATCTGGGATCGGAGGGTGGAGGAATTTGTTTGTTACCTTTTTATTCTCAAAGCTTGACGCTCGCTTATGCTCTGAAATGGAAAATCTGTCTCAGTCCTCAGGTGGACAGTTTCGACCGGTTATCCCAGCACAACCAGGGCAGACATTCATGTCATCATCTGCCCAACACTTCCAGTTACCAGGGCAGAATATATCTTCTTCAAATGTTGGAGTGCCAGCTGGTCAACTCCAGCCTCATCAATATCCTCAATCAATGCCGCAGTTAGTGCCAAGACCAGGCCATCCTAGCTATGGCACTCCTTCGTCCCAGGCTATACAAATGCCTTATGTTCAGACAAGGCCTCTTACATCTGTTCCACCTCAGTCTCAGCATAATGTGCCTGCACCAAATAATCATATGCATGGCTTGGGTGCTCATGGACTACCTCTTTCTTCACCATATACTTTCCAGCCAATGTCACAAATGCATGCACCCGTTGGAGTTGGTAATAGCCAACCTTGGCTGTCTTCTGTAAGCCAGCATACAAACCTCGTCTCACCGATCGAGCAAGCTAACCAGCATTCTTCAGTTTCTGGTGTAAACCCACAGTCTTCATCTGATTGGCAAGAGCACGCATCAGCTGATGGAAGAAGATATTATTACAACAAAAAAACCAAACAGTCCAGTTGGGAGAAGCCTTTGGAACTTATGACGCCACTTGAGAGGGCTGATGCATCAACTGTGTGGAAGGAATTTACAGCTCCGGATGGAAGAAAGTACTACTACAATAAGGTGACGAAAGAATCAAAGTGGACCATACCAGAAGAACTGAAGTTGGCTCGTGAGCAGGCTCAGAAAGAAGCTGTCCAAGGAACACAAACAGATATAGCTGTTTCCACGTCTCAACCTACACCTGCTGTTGGTCTCTCCCATGCTGAAACATCAGCAATTTCTTCCATCAACTCCACCATTTCTCCAAGGGTATCTGGGGTTGCATCGAGTCCAGTTCCGGTCACTCCTTTTGTTTCCGTATCCAATTCTCCTTCAGTGGTGGTTTCTGGGTCATCAGCCATCACCGGCGCACCCATTGCTTCAACAACTAGTGTGACTGGAGTACAGCCTTCTGTTATAACAGTTTCTTCTCAATCTGTCGCTGCTTCTGGAGGTACTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAGTGACTGCTTTTGAAAGCCTTGCATCTCAAGATATAAAAATTCCTGTTGATGGAGCCTCTACTGAGGACATTGAGGAAGCAAGGAAGGGAATGGCAGTTGCAGGAAAAGTTAACGAGACTGTTTTAGAGGAAAAATCTGCTGATGATGAACCTTTGGTATTTGCCAACAAGCTGGAGGCAAAGAATGCATTTAAAGCGCTTCTGGAATCTGTAAATGTTCAGTCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTGATGACAAACGATATGGAGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCATTCCATGAGTATTTAGGACATAGGAAAAAGTTAGACGCAGAAGAAAGACGCATAAGACAGAAAAAAGCTCGTGAGGAGTTCACTAAGATGTTGGAAGAGTCCAAGGAACTCGCATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAACGAGGAACGGTTCAAAGCTGTTGAACGTGCTAGAGACCGAGAGGATCTTTTTGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTGCTGAATATAGGAAATTTATCGAGTCATGTGATTACATAAAGGTGAGCAGCCAGTGGCGGAAAGTACAAGATCGATTGGAAGATGATGAAAGATGCTCACGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGACTTGGAAAAGGAAGAAGAGGAACAGAAGAAGATACAAAAGGAACGTGTGCGAAGAATTGAAAGAAAAAACCGCGACGAGTTTCGCAAACTCTTGGAAGAACACATTACTGCTGGTGTTCTTACAGCTAAAACTTTCTGGCGTGATTACTGTTTGAAGGTTAAGGAGTTGCCTCAGTATCAAGCCGTTGCTTCAAATATATCTGGCTCAACACCAAAGGACTTGTTTGAGGATGTTCTGGAGGAATTAGAGAATAAGTATCATGAAGAAAAAGCTCAGATAAAAGATGTGATGAAGGCAGCGAAGATTACCGTCACTTCATCATGGACATTTGATGACTTTAAGGCTGCCGTTGAAGAGGGTGGTGGTTCTCTTGCAGTTTCAGATATAAATTTTAAGCTTGTATATGAGGACTTACTAGAAAGAGCCAAGGAAAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTCTGGTTGATGACTTCTCAAGACTGCTCCAGTCATTCAAGGAGATTACAACTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGTAGAGAGTGAAGAATACAGATCAATTGGGGAAGAGAGCTTTGGGAAGGAAGTTTTTGAGGAATACGTCATGCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAACGCGAGGAAAAAGAGAAGCGGAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAAGAAAAGGGTCGGGTTAAGAAGGATGAAACAGATAGTGAAAATGTAGATGCAAGCGAAACTCATGTCCACAGAGAAGACAAGAAAAGGGAAAAAGACAAAGATAGGAAACATCGGAAGCGGCATCATAGTGCCACTGATGATGGTGGTTCTGATAAAGACGAGAAAGAGGAGTCTAAGAAGCCCCGCAAACATGGTAGTGACCGAAAAAAATCAAGGAAGCACACATATTCTCCTGAATCAGACAGTGAGAGTAGGCACAGAAGGCACAAGAGAGATCATCGAGATGGTTCTCGTAGAAATCACGATGAACTTGAAGATGGGGAGCTTGGCGAGGATGGGGAAATTCAATAG 3279 45.07 MACNNRTQSRGRVAFSWENKPGVCKSAHRRLDDDDAGLVQKQLRPPPCTPARKGNMKVQKDGGIGDPFLAAFRECTVGDGEKNKSGIGGWRNLFVTFLFSKLDARLCSEMENLSQSSGGQFRPVIPAQPGQTFMSSSAQHFQLPGQNISSSNVGVPAGQLQPHQYPQSMPQLVPRPGHPSYGTPSSQAIQMPYVQTRPLTSVPPQSQHNVPAPNNHMHGLGAHGLPLSSPYTFQPMSQMHAPVGVGNSQPWLSSVSQHTNLVSPIEQANQHSSVSGVNPQSSSDWQEHASADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTIPEELKLAREQAQKEAVQGTQTDIAVSTSQPTPAVGLSHAETSAISSINSTISPRVSGVASSPVPVTPFVSVSNSPSVVVSGSSAITGAPIASTTSVTGVQPSVITVSSQSVAASGGTGPPAVVHANASSVTAFESLASQDIKIPVDGASTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKLEAKNAFKALLESVNVQSDWTWEQAMREIIDDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESKELASSTRWSKAVSMFENEERFKAVERARDREDLFESYIVELERKEKERAAEEHKKNIAEYRKFIESCDYIKVSSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKERVRRIERKNRDEFRKLLEEHITAGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLEELENKYHEEKAQIKDVMKAAKITVTSSWTFDDFKAAVEEGGGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQRLVDDFSRLLQSFKEITTSSNWEDSKQLFVESEEYRSIGEESFGKEVFEEYVMHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKEREREKEKGRVKKDETDSENVDASETHVHREDKKREKDKDRKHRKRHHSATDDGGSDKDEKEESKKPRKHGSDRKKSRKHTYSPESDSESRHRRHKRDHRDGSRRNHDELEDGELGEDGEIQ 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83375235 83389390 - Hsped.01g18480.1 Hepe01g1848 560958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1848 1092 ProSitePatterns WW/rsp5/WWP domain signature. 285 310 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 FunFam Pre-mRNA-processing protein 40A 324 352 - -
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 39 60 - -
Hepe01g1848 1092 SUPERFAMILY FF domain 663 732 IPR036517 -
Hepe01g1848 1092 Coils Coil 719 747 - -
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 200 219 - -
Hepe01g1848 1092 Coils Coil 797 824 - -
Hepe01g1848 1092 Gene3D FF domain 872 946 IPR036517 -
Hepe01g1848 1092 ProSiteProfiles FF domain profile. 603 658 IPR002713 -
Hepe01g1848 1092 Coils Coil 860 884 - -
Hepe01g1848 1092 ProSiteProfiles FF domain profile. 536 590 IPR002713 -
Hepe01g1848 1092 SMART FF_2 536 590 IPR002713 -
Hepe01g1848 1092 SMART FF_2 878 933 IPR002713 -
Hepe01g1848 1092 SMART FF_2 745 806 IPR002713 -
Hepe01g1848 1092 SMART FF_2 603 658 IPR002713 -
Hepe01g1848 1092 SMART FF_2 671 725 IPR002713 -
Hepe01g1848 1092 Gene3D - 266 321 - -
Hepe01g1848 1092 Coils Coil 924 987 - -
Hepe01g1848 1092 CDD WW 283 312 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 ProSiteProfiles FF domain profile. 878 933 IPR002713 -
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 1048 1064 - -
Hepe01g1848 1092 Gene3D - 322 366 - -
Hepe01g1848 1092 ProSiteProfiles FF domain profile. 671 725 IPR002713 -
Hepe01g1848 1092 ProSiteProfiles FF domain profile. 743 806 IPR002713 -
Hepe01g1848 1092 FunFam Pre-mRNA-processing protein 40A 736 817 - -
Hepe01g1848 1092 FunFam Pre-mRNA-processing protein 40A 666 734 - -
Hepe01g1848 1092 CDD WW 326 353 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 Pfam FF domain 538 587 IPR002713 -
Hepe01g1848 1092 Pfam FF domain 605 655 IPR002713 -
Hepe01g1848 1092 Pfam FF domain 883 930 IPR002713 -
Hepe01g1848 1092 Pfam FF domain 747 802 IPR002713 -
Hepe01g1848 1092 Gene3D FF domain 736 818 IPR036517 -
Hepe01g1848 1092 Gene3D FF domain 592 664 IPR036517 -
Hepe01g1848 1092 Gene3D FF domain 665 735 IPR036517 -
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 267 288 - -
Hepe01g1848 1092 ProSiteProfiles WW/rsp5/WWP domain profile. 279 312 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 Pfam WW domain 283 310 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 Pfam WW domain 326 351 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 SUPERFAMILY FF domain 597 665 IPR036517 -
Hepe01g1848 1092 FunFam Pre-mRNA-processing protein 40A 872 945 - -
Hepe01g1848 1092 SUPERFAMILY WW domain 313 354 IPR036020 GO:0005515(InterPro)
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 1017 1039 - -
Hepe01g1848 1092 FunFam pre-mRNA-processing protein 40A isoform X1 535 590 - -
Hepe01g1848 1092 SUPERFAMILY FF domain 738 813 IPR036517 -
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 936 1008 - -
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 267 287 - -
Hepe01g1848 1092 MobiDBLite consensus disorder prediction 936 1092 - -
Hepe01g1848 1092 SUPERFAMILY FF domain 528 589 IPR036517 -
Hepe01g1848 1092 ProSiteProfiles WW/rsp5/WWP domain profile. 320 353 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 FunFam Pre-mRNA-processing protein 40A 592 665 - -
Hepe01g1848 1092 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 279 911 IPR039726 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005685(PANTHER)|GO:0045292(InterPro)|GO:0071004(PANTHER)
Hepe01g1848 1092 SUPERFAMILY WW domain 284 318 IPR036020 GO:0005515(InterPro)
Hepe01g1848 1092 SMART ww_5 280 312 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 SMART ww_5 321 353 IPR001202 GO:0005515(InterPro)
Hepe01g1848 1092 Gene3D FF domain 536 591 IPR036517 -
Hepe01g1848 1092 Coils Coil 652 681 - -
Hepe01g1848 1092 SUPERFAMILY FF domain 879 940 IPR036517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1848 K12821 - - csv:101203479 1513.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0783 Hepe-Chr1:71384887 Hepe01g1848 Hepe-Chr1:83375235 1.60e-40 transposed
Hepe06g1949 Hepe-Chr6:70772903 Hepe01g1848 Hepe-Chr1:83375235 7.63e-13 transposed
Hepe01g1848 Hepe-Chr1:83375235 Hepe07g0398 Hepe-Chr7:4033537 1.10e-203 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37