Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1851 ATGGGTGATCTTGAAAATGAGGAAATGGGGTTTAGAAATTCGAATGAAGGGTTATTGAATTGTGCAGATAAAATGGCGATGGGGTCTTTCTTTGGGACTGGTTGGGATCCACTTGTTTCGTTAGGTCAAAGTGAGAATTTTGGAGCTGCTGCTGCTTCAATGGTGTCCTCTCATGGCGAATTTTCAAATTCTTTTCCTGTTCAATATCCGACAGATTTGGAGATGGGGACGAAGTTGCCATGTTTTGGGAGTGGAAATTATTCGGACATGTTTGGTTCTTTTGGTCTTTCTGGTCAGATTCTTGGAGGCTGTTCTTCAAATTACAGAAATGGAGGAACCACCAACAACAACACTGCACAAACATCACAAGAAAATTTACCCCCATCTGCTGAAGAAGCTGCTTTAGGATCACCAAATGATAAAATCAGAAAACGACCCCTTGATTCCACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGGGAAATTGAAGAAGGATGTTTCTGGGGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAGAATTTACGCGGTAAATCAACTGGAAAACAAACTAAAGAGAAGTCTAATGATAATAGTGCAGAAGCTCCAAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTTAGGAGGGAGAAGATTAGTGAGAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAATTATGTTCAGTCACTGCAACAACAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAACATCGACATCGAGAGGATTTTATCCAAAGATCTTTTCCACGCACGGGGCAGCAATGGAACTGTTCTCGGATTTGATCCGGGGTTGAGCGCCGTTCCCCCAGTCCTTCCTCACCGAATGTTTCAGTTTCAGGGAACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTTTGCATCAGACTATCTTAGAAAGCGATCTTCAAAGTCTTCTTCAAATGGGATTCGACTCGAGTTCGGCCATTGACAATTTGGGACCAAATGGTATTCTTCATAATCTTATAAAACTTTTCATTCTACAGTTCCAAAGTCTACATATGTTTGATCTAAAATTTATATTGCAATGGCAGGGAGGTTGA 1227 41.73 MGDLENEEMGFRNSNEGLLNCADKMAMGSFFGTGWDPLVSLGQSENFGAAAASMVSSHGEFSNSFPVQYPTDLEMGTKLPCFGSGNYSDMFGSFGLSGQILGGCSSNYRNGGTTNNNTAQTSQENLPPSAEEAALGSPNDKIRKRPLDSTFPFSPNKKSEGKLKKDVSGDSSSTQEEKNAEMEQNLRGKSTGKQTKEKSNDNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDLFHARGSNGTVLGFDPGLSAVPPVLPHRMFQFQGTMSNMPTTSTQFPPLHQTILESDLQSLLQMGFDSSSAIDNLGPNGILHNLIKLFILQFQSLHMFDLKFILQWQGG 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83410454 83413907 + Hsped.01g18510.1 Hepe01g1851 560961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1851 408 Pfam Helix-loop-helix DNA-binding domain 223 271 IPR011598 GO:0046983(InterPro)
Hepe01g1851 408 MobiDBLite consensus disorder prediction 158 210 - -
Hepe01g1851 408 FunFam Basic helix-loop-helix transcription factor 217 289 - -
Hepe01g1851 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 285 IPR036638 GO:0046983(InterPro)
Hepe01g1851 408 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 354 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe01g1851 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 270 IPR011598 GO:0046983(InterPro)
Hepe01g1851 408 MobiDBLite consensus disorder prediction 112 128 - -
Hepe01g1851 408 CDD bHLH_AtBPE_like 210 295 - -
Hepe01g1851 408 Gene3D - 217 289 IPR036638 GO:0046983(InterPro)
Hepe01g1851 408 MobiDBLite consensus disorder prediction 112 210 - -
Hepe01g1851 408 SMART finulus 226 276 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1851 Hepe-Chr1:83410454 Hepe02g2543 Hepe-Chr2:72377186 1.19e-46 dispersed
Hepe10g1832 Hepe-Chr10:55051312 Hepe01g1851 Hepe-Chr1:83410454 2.16e-48 transposed
Hepe07g2084 Hepe-Chr7:65134691 Hepe01g1851 Hepe-Chr1:83410454 9.24e-36 transposed
Hepe01g1851 Hepe-Chr1:83410454 Hepe03g1487 Hepe-Chr3:71700449 4.02e-07 wgd
Hepe01g1851 Hepe-Chr1:83410454 Hepe08g1356 Hepe-Chr8:15782176 2.70e-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54869 PF00010 HLH 4.20E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1851 - - - 0.0