Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1853 ATGACGATTCTGGTTGCCTCCGACCGTAAGTACCGGCGGAGCCCTAAAAAGCCCTTACTCCCCGAGCAATTTGATCACCAGGAGCCTATCGAGGTAGGGTTAGATGGCGCATCGTTCTCCGGCGCTGTCTTCAACCTCTCGAGCACCATCGTCGGCGCCGGAATCATGGCTCTCCCGGCCGTCGTTAAGCAATTAGGTCTAATTCCGGGATTGTTCTTTATCATGATGGGATCGGTGTTGACGGAATTGTCAATTGACTTCATCCTGAAATTCACTCGCGCTTCCAAATCCGTTACCTACGCCGGCGCCGTCGGCGACACTTTCGGCGACGCCGGTCGGACCCTCTTGCAGGTTTGCATCGTGGTCAACAATTTGGGCATGCTCGTCGTCTACATGATCATCATTGGTGATGTGTTTTCAGGAACATCGGCAAATAACATCCATCATATGGGTGTCATGGAAGAATGGTTCGGTCAACATTGGTGGACCAGCCGCATATCCTTAATGCTGCTTACCACGCTTCTAGTTTTTGCGCCTCTAATTTCCTTTAAGCGTGTAGATTCTTTGAGGTACACATCAGCATTGTCAGTGGCCTTGGCCATTGTCTTCGTGGCAATCACGGCTGGAGTAGCGATCGCGAAATTGATGGATGGGAGTATTGGAATGCCACGTCTGATGCCCAAAGTCGTTGATCAGGCATCATTTTGGAAACTTTTTACCACTGTTCCAGTCCTTGTCACTGCCTATATCTGTCACCATAATGTTCATCCAATTGAGAATGAACTGAAAGATCCCACACAAATGAAGTCAATAGTTCGAACATCTCTAACAATATGCTTGTCGGTATATATCGCGACGAGCTTCTTCGGATTTCTCCTGTTTGGAGACCAAACGCTGGATGATGTACTTGCCAATTTTGATGGAGATCTTGGACTTCCATACAGCTCATTTCTCGATGATGTTGTAAGGGTGAGCTATGGCATCCACCTGATGCTTGTATTTCCAATTGTTTTTTTCTCCCTTCGCCTCAACGTCGACGGTCTGCTCTTTCCTTATGCCATACCTATCACTTTCGATGACCGACGATTCTTCTCGATAACTATAGCTCTCATGAGTTTCATCTTCATTGGGGCCAACTTTGTTCCCAGCATCTGGGATGCTTTCCAACTCACTGGAGCCACTGCTGCCATCTCTGTTGGCTTCATATTTCCCGCTGCTCTAGTCCTCAGGGACACTTGTGGAATAGCATCGAAGAAAGACAGACTGATAGCATGGATAATGTTCGTATTAGCTATTTCGTCGAGTATGGCCGCAATCTCGAGCGATATCTACAGTAGTTACGTTATCGAGAAACGCGCTTGA 1362 47.65 MTILVASDRKYRRSPKKPLLPEQFDHQEPIEVGLDGASFSGAVFNLSSTIVGAGIMALPAVVKQLGLIPGLFFIMMGSVLTELSIDFILKFTRASKSVTYAGAVGDTFGDAGRTLLQVCIVVNNLGMLVVYMIIIGDVFSGTSANNIHHMGVMEEWFGQHWWTSRISLMLLTTLLVFAPLISFKRVDSLRYTSALSVALAIVFVAITAGVAIAKLMDGSIGMPRLMPKVVDQASFWKLFTTVPVLVTAYICHHNVHPIENELKDPTQMKSIVRTSLTICLSVYIATSFFGFLLFGDQTLDDVLANFDGDLGLPYSSFLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPYAIPITFDDRRFFSITIALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALVLRDTCGIASKKDRLIAWIMFVLAISSSMAAISSDIYSSYVIEKRA 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83432257 83435869 - Hsped.01g18530.1 Hepe01g1853 560963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1853 453 Pfam Transmembrane amino acid transporter protein 37 435 IPR013057 -
Hepe01g1853 453 PANTHER AMINO ACID TRANSPORTER 36 437 - GO:0003333(PANTHER)|GO:0015179(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1853 K14207 - - csv:101204458 811.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1853 Hepe-Chr1:83432257 Hepe02g0904 Hepe-Chr2:10876945 3.23e-176 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0686 . 58 478 Amino Acid/Auxin Permease AAAP Family AT2G41190 64.3 1.6e-146 516.5
Hepe05g0684 . 36 414 Amino Acid/Auxin Permease AAAP Family AT2G41190 66.0 2.6e-136 482.6
Hepe05g0685 . 68 374 Amino Acid/Auxin Permease AAAP Family AT2G41190 55.9 1.3e-92 337.4
Hepe02g0904 . 3 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 68.9 6.7e-176 614.0
Hepe01g1853 . 18 447 Amino Acid/Auxin Permease AAAP Family AT3G30390 59.0 6.7e-144 507.7
Hepe10g1742 . 1 195 Amino Acid/Auxin Permease AAAP Family AT3G28960 50.3 7.2e-49 191.8
Hepe02g0904 . 21 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 68.9 1.1e-167 586.6
Hepe01g1853 . 35 445 Amino Acid/Auxin Permease AAAP Family AT5G38820 60.0 6.9e-141 497.7
Hepe03g1644 . 1 489 Amino Acid/Auxin Permease AAAP Family AT1G80510 72.3 4.7e-188 654.4
Hepe02g2943 . 55 563 Amino Acid/Auxin Permease AAAP Family AT5G02180 51.0 5.1e-130 461.8
Hepe02g2943 . 1 497 Amino Acid/Auxin Permease AAAP Family AT2G39130 65.5 1.7e-177 619.4
Hepe01g1044 . 45 434 Amino Acid/Auxin Permease AAAP Family AT2G39130 69.6 6.6e-153 537.7
Hepe09g1836 . 6 168 Amino Acid/Auxin Permease AAAP Family AT5G15240 53.0 7.1e-42 168.3
Hepe01g0665 . 10 432 Amino Acid/Auxin Permease AAAP Family AT3G56200 58.3 3.2e-135 478.8
Hepe01g0666 . 22 395 Amino Acid/Auxin Permease AAAP Family AT3G56200 61.2 5.3e-122 434.9
Hepe02g2943 . 1 511 Amino Acid/Auxin Permease AAAP Family AT3G54830 59.7 9.7e-166 580.5
Hepe01g1044 . 50 434 Amino Acid/Auxin Permease AAAP Family AT3G54830 64.6 8.9e-135 477.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30