Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g1859 ATGGAGGATGGAGAATATTGTAATACGGGGCTTCTTCTTGGGCTGGGGAGAGGAGGGGATGATTCAGTGCGGTCAGTCGTACCGGAAGTAATGGGCGGCGGCGGTGTGAAGATGAAGAAGCTGCAGGTTTTGAAGTTCGATGACATTTTGCCTTCTTTGACGCTTGGGTTGTGCGCCGAGGATTTGATCCAGCAGGGCTCTTCTTCTTCGGCTAGTCCCGTGTCGTCGTTTTCTAACTCCTCCGGGTTTAAGAGGGATCGAGATCAGGGCGGCGCCGGTGAAGACAAGGAGGCGGAGGTGGAGGTGGAGGTGTATATGAAAGTTGTTGAGGAAGATGATGATGGAAGTCCGAGGAAGAAACTTCGACTCAGTAAAGAACAATCCGCCATTTTAGAAGATAATTTCAAAGAACACTCGAGTCTCACTCCGAAGCAAAAGCAGGATTTGGCTATACAGTTAAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAATCTCAAAGAAGAGAACACAAGGCTTCAAAAGGAGCTTCAAGAACTCAAATCACTCAAATTAACTGCTCCGCCGTTCTGTATGCAGCTGCAAGCCGCCACCCTCACCGTTTGCCCTTCCTGTGAGAGGTCCATTTGCGGCGGCGGCAGCGGCAGCGATGCATCTCCGGCCACCACCTTCTCGATTGGGCCAAAGCCTCACTTTCTCAAATTCCCCTTTAACCACCCGTCGGCGGCTTGTTAG 807 49.81 MEDGEYCNTGLLLGLGRGGDDSVRSVVPEVMGGGGVKMKKLQVLKFDDILPSLTLGLCAEDLIQQGSSSSASPVSSFSNSSGFKRDRDQGGAGEDKEAEVEVEVYMKVVEEDDDGSPRKKLRLSKEQSAILEDNFKEHSSLTPKQKQDLAIQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCENLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCERSICGGGSGSDASPATTFSIGPKPHFLKFPFNHPSAAC 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83530720 83531913 + Hsped.01g18590.1 Hepe01g1859 560969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g1859 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 67 237 IPR050762 -
Hepe01g1859 268 MobiDBLite consensus disorder prediction 67 98 - -
Hepe01g1859 268 SUPERFAMILY Homeodomain-like 115 182 IPR009057 -
Hepe01g1859 268 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677(InterPro)
Hepe01g1859 268 Coils Coil 173 210 - -
Hepe01g1859 268 Pfam Homeobox associated leucine zipper 174 207 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1859 268 Pfam Homeodomain 118 172 IPR001356 GO:0003677(InterPro)
Hepe01g1859 268 Gene3D - 111 179 - -
Hepe01g1859 268 SMART halz 174 217 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe01g1859 268 SMART HOX_1 116 178 IPR001356 GO:0003677(InterPro)
Hepe01g1859 268 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe01g1859 268 CDD homeodomain 117 175 IPR001356 GO:0003677(InterPro)
Hepe01g1859 268 MobiDBLite consensus disorder prediction 67 85 - -
Hepe01g1859 268 FunFam Homeobox-leucine zipper protein 18 106 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1859 Hepe-Chr1:83530720 Hepe07g0591 Hepe-Chr7:6437643 7.97e-61 dispersed
Hepe01g1859 Hepe-Chr1:83530720 Hepe04g1352 Hepe-Chr4:69173731 8.17e-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54871 PF00046 Homeodomain 2.10E-16 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g1859 K09338 - csv:101212868 327.02